Variant report

Variant	rs55819047
Chromosome Location	chr2:127793029-127793030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11888878	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893989	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902275	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12465042	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12474412	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12476339	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12477924	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17014784	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17014818	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17014851	0.89[EUR][1000 genomes]
rs17040070	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2071268	0.89[EUR][1000 genomes]
rs2071270	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3768859	0.89[EUR][1000 genomes]
rs3768860	0.89[EUR][1000 genomes]
rs4662703	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4663090	0.84[EUR][1000 genomes]
rs55999604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56408880	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60022219	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66507470	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6745677	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67920725	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72481904	0.89[EUR][1000 genomes]
rs727095	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72846676	0.89[EUR][1000 genomes]
rs7570116	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573824	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs880436	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999422	chr2:127464647-127956543	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1004930	chr2:127477369-127938234	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv834365	chr2:127616996-127793863	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv459230	chr2:127771006-127844735	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv583032	chr2:127771006-127844735	Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127783600-127797000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:127783800-127815600	Weak transcription	Aorta	Aorta
3	chr2:127790400-127797000	Weak transcription	GM12878-XiMat	blood
4	chr2:127790600-127795800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:127791200-127793200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:127791400-127793200	Enhancers	Fetal Lung	lung
7	chr2:127791600-127793400	Enhancers	Fetal Intestine Small	intestine
8	chr2:127791600-127793800	Enhancers	Fetal Intestine Large	intestine
9	chr2:127791600-127793800	Enhancers	HepG2	liver
10	chr2:127792000-127795000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr2:127792000-127795000	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:127792600-127793200	Enhancers	Liver	Liver
13	chr2:127793000-127793200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:127793000-127793200	Enhancers	Fetal Stomach	stomach

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