Variant report
Variant | rs7573824 |
---|---|
Chromosome Location | chr2:127778235-127778236 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:127774450..127776161-chr2:127777215..127779693,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000238788 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11888878 | 0.96[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11893989 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11902275 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12465042 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12474412 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12476339 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12477924 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17014784 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17014818 | 0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs17014851 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes] |
rs17040070 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2071268 | 0.88[CEU][hapmap];0.87[EUR][1000 genomes] |
rs2071270 | 0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs3768859 | 0.88[CEU][hapmap];0.86[EUR][1000 genomes] |
rs3768860 | 0.89[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4662703 | 0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4663089 | 0.89[CEU][hapmap] |
rs4663090 | 0.83[EUR][1000 genomes] |
rs55819047 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs55999604 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs56408880 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs60022219 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs66507470 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6745677 | 0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs67920725 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs72481904 | 0.87[EUR][1000 genomes] |
rs727095 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs72846676 | 0.86[EUR][1000 genomes] |
rs7570116 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs880436 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999422 | chr2:127464647-127956543 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv1004930 | chr2:127477369-127938234 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | nsv834365 | chr2:127616996-127793863 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv834366 | chr2:127633714-127784692 | Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv459230 | chr2:127771006-127844735 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv583032 | chr2:127771006-127844735 | Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:127777800-127778400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |