Variant report

Variant	rs558226019
Chromosome Location	chr17:17310737-17310738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17303349..17305790-chr17:17309231..17310797,2	MCF-7	breast:
2	chr17:17308878..17311513-chr17:17316490..17320191,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	nsv1058849	chr17:17308009-17348548	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1058804	chr17:17308984-17348548	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1062207	chr17:17310099-17344599	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv543234	chr17:17310099-17344599	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17302000-17318800	Weak transcription	Right Atrium	heart
2	chr17:17305000-17311400	Weak transcription	Pancreas	Pancrea
3	chr17:17306600-17315400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr17:17307000-17311400	Weak transcription	Osteobl	bone
5	chr17:17307200-17316600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:17307800-17311800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr17:17307800-17313000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:17308000-17310800	Enhancers	Primary T cells from cord blood	blood
9	chr17:17308000-17310800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:17308000-17311000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:17308000-17311600	Weak transcription	HUVEC	blood vessel
12	chr17:17308000-17313400	Weak transcription	Brain Substantia Nigra	brain
13	chr17:17308000-17313600	Weak transcription	Fetal Brain Male	brain
14	chr17:17308000-17314400	Enhancers	Fetal Thymus	thymus
15	chr17:17308000-17322200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr17:17308200-17311600	Enhancers	Thymus	Thymus
17	chr17:17308200-17316600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr17:17308400-17312000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr17:17308800-17312400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:17308800-17312400	Enhancers	Dnd41	blood
21	chr17:17309000-17312200	Enhancers	Adipose Nuclei	Adipose
22	chr17:17309200-17312600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr17:17309600-17313000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr17:17309800-17312000	Weak transcription	Spleen	Spleen
25	chr17:17310000-17312400	Enhancers	HepG2	liver
26	chr17:17310000-17313000	Weak transcription	Fetal Muscle Leg	muscle
27	chr17:17310200-17311800	Weak transcription	Liver	Liver
28	chr17:17310200-17313000	Weak transcription	Brain Germinal Matrix	brain
29	chr17:17310400-17311000	Enhancers	Fetal Brain Female	brain
30	chr17:17310400-17311400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr17:17310400-17311400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr17:17310400-17315400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr17:17310400-17317200	Weak transcription	Lung	lung
34	chr17:17310600-17311000	Flanking Active TSS	Hela-S3	cervix
35	chr17:17310600-17311600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr17:17310600-17311800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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