Variant report
| Variant | rs55824304 |
|---|---|
| Chromosome Location | chr6:80697337-80697338 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs2230510 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs55981655 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs56004543 | 0.83[AMR][1000 genomes] |
| rs57018426 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs57279047 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57787325 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs57906390 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59000209 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61354305 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs61607353 | 0.83[AMR][1000 genomes] |
| rs73474059 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73474067 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73474068 | 1.00[ASN][1000 genomes] |
| rs73474069 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73474076 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73474082 | 1.00[ASN][1000 genomes] |
| rs73474087 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73476022 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73476046 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73476061 | 0.83[AMR][1000 genomes] |
| rs73477920 | 0.83[AMR][1000 genomes] |
| rs73477923 | 0.83[AMR][1000 genomes] |
| rs73747990 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73747991 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:80696800-80702600 | Weak transcription | Thymus | Thymus |
