Variant report

Variant	rs55832965
Chromosome Location	chr15:78531298-78531299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12101964	1.00[AMR][1000 genomes]
rs28638260	1.00[AMR][1000 genomes]
rs56394138	1.00[AMR][1000 genomes]
rs74027743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78527400-78535600	Weak transcription	Fetal Thymus	thymus
2	chr15:78527800-78535400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:78528000-78531400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:78528000-78535400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:78528000-78535400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:78528000-78535600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:78529200-78535400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:78530200-78532200	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:78530400-78533200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links