Variant report

Variant	rs56394138
Chromosome Location	chr15:78382062-78382063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78358047..78360279-chr15:78381418..78383030,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167202	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28638260	1.00[AMR][1000 genomes]
rs55676203	1.00[AMR][1000 genomes]
rs55832965	1.00[AMR][1000 genomes]
rs56161805	1.00[AMR][1000 genomes]
rs74027743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78375400-78383800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:78375600-78383800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:78375600-78384400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:78376800-78384600	Weak transcription	Right Atrium	heart
5	chr15:78377000-78385600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:78377200-78384600	Weak transcription	Lung	lung
7	chr15:78378000-78384600	Weak transcription	Placenta	Placenta
8	chr15:78378200-78384600	Weak transcription	Fetal Thymus	thymus
9	chr15:78378800-78383000	Weak transcription	Fetal Lung	lung
10	chr15:78379000-78384400	Weak transcription	Adipose Nuclei	Adipose
11	chr15:78380200-78386400	Enhancers	Stomach Mucosa	stomach
12	chr15:78380600-78384000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:78381000-78384600	Weak transcription	Spleen	Spleen
14	chr15:78381000-78385600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:78381200-78382400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr15:78381200-78384600	Weak transcription	Pancreas	Pancrea
17	chr15:78381200-78384600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:78381400-78384600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:78381400-78384600	Weak transcription	Gastric	stomach
20	chr15:78381400-78384600	Weak transcription	HSMMtube	muscle
21	chr15:78381800-78383200	Weak transcription	Fetal Intestine Small	intestine
22	chr15:78381800-78383200	Weak transcription	HepG2	liver
23	chr15:78381800-78384600	Weak transcription	Fetal Intestine Large	intestine
24	chr15:78381800-78384600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:78382000-78384400	Weak transcription	Small Intestine	intestine
26	chr15:78382000-78384600	Weak transcription	Colonic Mucosa	Colon

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