Variant report

Variant	rs55833104
Chromosome Location	chr6:144838636-144838637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10457764	0.83[ASN][1000 genomes]
rs10499230	0.86[ASN][1000 genomes]
rs12190718	0.80[ASN][1000 genomes]
rs12202539	0.80[ASN][1000 genomes]
rs12204734	0.80[ASN][1000 genomes]
rs12209699	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs28588721	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34983431	0.88[EUR][1000 genomes]
rs4259269	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60530618	0.83[ASN][1000 genomes]
rs73600166	0.83[ASN][1000 genomes]
rs73600170	0.83[ASN][1000 genomes]
rs73603015	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144764400-144838800	Weak transcription	A549	lung
2	chr6:144795800-144849800	Weak transcription	HMEC	breast
3	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:144812400-144840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:144812400-144844800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
8	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:144812600-144849600	Weak transcription	NH-A	brain
10	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
12	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
13	chr6:144815200-144881000	Weak transcription	NHEK	skin
14	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:144821000-144844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:144821200-144850000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:144821200-144861000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:144827200-144857200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:144829000-144849800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:144829200-144849600	Weak transcription	Right Ventricle	heart
21	chr6:144829200-144849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:144829600-144849800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:144829800-144849200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:144829800-144849600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:144829800-144849600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:144829800-144849600	Weak transcription	Spleen	Spleen
27	chr6:144829800-144849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:144829800-144850000	Weak transcription	Esophagus	oesophagus
29	chr6:144829800-144854200	Weak transcription	Gastric	stomach
30	chr6:144829800-144863800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:144831400-144849200	Weak transcription	Fetal Heart	heart
32	chr6:144831400-144879000	Strong transcription	Primary B cells from cord blood	blood
33	chr6:144831600-144853200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr6:144831800-144857000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:144832000-144844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:144832200-144856800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr6:144832400-144862200	Weak transcription	Small Intestine	intestine
38	chr6:144833400-144842200	Strong transcription	Primary hematopoietic stem cells	blood
39	chr6:144833400-144845600	Strong transcription	Fetal Thymus	thymus
40	chr6:144833400-144849600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:144833600-144839800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:144833800-144839000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr6:144833800-144839600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:144833800-144839600	Strong transcription	Ovary	ovary
45	chr6:144833800-144846200	Strong transcription	HepG2	liver
46	chr6:144833800-144857000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:144833800-144857200	Strong transcription	Primary T cells from cord blood	blood
48	chr6:144833800-144868200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:144834000-144839800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:144834000-144839800	Strong transcription	Dnd41	blood

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