Variant report

Variant	rs73603015
Chromosome Location	chr6:144874526-144874527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144864923..144867106-chr6:144874240..144876949,2	K562	blood:
2	chr6:144874039..144876906-chr6:144886839..144888546,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10080939	0.93[EUR][1000 genomes]
rs10447422	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10457764	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499230	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155359	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12190718	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192622	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12200263	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12202539	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12204734	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12205460	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209699	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12209889	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17073869	0.90[EUR][1000 genomes]
rs17793570	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1918749	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28588721	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34810766	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4460225	0.90[EUR][1000 genomes]
rs4615409	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55833104	0.83[ASN][1000 genomes]
rs56264877	0.90[EUR][1000 genomes]
rs60530618	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917268	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917519	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6923281	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6942069	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73600166	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73600170	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773603	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
2	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
3	chr6:144815200-144881000	Weak transcription	NHEK	skin
4	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:144831400-144879000	Strong transcription	Primary B cells from cord blood	blood
6	chr6:144837200-144880800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:144850200-144877400	Weak transcription	HMEC	breast
8	chr6:144850400-144903200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:144850400-144903200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:144850400-144904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:144850600-144881600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:144853600-144896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:144854600-144881200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:144856000-144875800	Weak transcription	Fetal Heart	heart
15	chr6:144857200-144904000	Weak transcription	Psoas Muscle	Psoas
16	chr6:144858200-144887800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr6:144858600-144879200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr6:144858600-144879400	Strong transcription	HepG2	liver
19	chr6:144859600-144878600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:144860200-144879200	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr6:144861000-144878400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:144861200-144885000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:144861800-144876400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:144864000-144876600	Weak transcription	Gastric	stomach
25	chr6:144864400-144878800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:144864800-144876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:144864800-144876400	Weak transcription	Esophagus	oesophagus
28	chr6:144864800-144885200	Weak transcription	Colonic Mucosa	Colon
29	chr6:144864800-144885800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr6:144864800-144899000	Weak transcription	Small Intestine	intestine
31	chr6:144865000-144879600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr6:144866200-144875000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:144866200-144881600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:144867000-144878600	Weak transcription	NHLF	lung
35	chr6:144867400-144903800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:144868200-144879600	Strong transcription	HUVEC	blood vessel
37	chr6:144868600-144875800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:144869000-144879800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:144869400-144879000	Strong transcription	Fetal Thymus	thymus
40	chr6:144869400-144879200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:144869400-144879400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:144869600-144874600	Strong transcription	Dnd41	blood
43	chr6:144869600-144874800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:144869600-144879000	Strong transcription	Primary T cells from cord blood	blood
45	chr6:144869600-144879000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:144869600-144879600	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr6:144869600-144887000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr6:144869800-144874800	Strong transcription	Fetal Intestine Large	intestine
49	chr6:144869800-144878600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:144869800-144879200	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links