Variant report

Variant	rs11155359
Chromosome Location	chr6:144900840-144900841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144896433..144898647-chr6:144899141..144902134,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10080939	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10447422	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457761	0.86[CHB][hapmap]
rs10457764	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10499230	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11155367	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11155369	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11756963	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12190718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12192622	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198720	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12200263	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202539	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12204734	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205460	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12209699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12209889	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17073869	0.90[EUR][1000 genomes]
rs17793570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918749	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588721	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34810766	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4259269	0.85[CEU][hapmap]
rs4460225	0.90[EUR][1000 genomes]
rs4615409	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56264877	0.90[EUR][1000 genomes]
rs60530618	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6570634	0.85[CHB][hapmap]
rs6912724	0.85[CHB][hapmap]
rs6917268	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917519	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923281	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6942069	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73600166	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73600170	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73603015	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7773603	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321976	0.86[CHB][hapmap]
rs9497026	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
2	chr6:144850400-144903200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:144850400-144903200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:144850400-144904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:144857200-144904000	Weak transcription	Psoas Muscle	Psoas
6	chr6:144867400-144903800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:144872000-144903000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:144873000-144903200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:144873000-144903800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:144874000-144904200	Weak transcription	Placenta	Placenta
11	chr6:144877000-144903000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:144877000-144904200	Weak transcription	Fetal Stomach	stomach
13	chr6:144878000-144903400	Weak transcription	Fetal Brain Male	brain
14	chr6:144878600-144901200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:144879200-144904000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:144882000-144902800	Weak transcription	Fetal Heart	heart
18	chr6:144885400-144903800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:144885800-144943400	Weak transcription	Ovary	ovary
20	chr6:144888600-144903200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:144888800-144904000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:144889200-144903000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:144895200-144904000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:144895600-144902800	Strong transcription	Primary B cells from cord blood	blood
25	chr6:144895800-144901600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:144896400-144901800	Strong transcription	Primary hematopoietic stem cells	blood
27	chr6:144896400-144902200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr6:144896600-144903000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:144896600-144903200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:144896600-144903800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:144896800-144903200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:144897000-144903200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:144897400-144901400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:144897400-144904000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:144897800-144902000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:144897800-144902200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:144897800-144902200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:144897800-144902200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:144898000-144901800	Strong transcription	Dnd41	blood
40	chr6:144898000-144902000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr6:144898200-144902000	Genic enhancers	HepG2	liver
42	chr6:144898200-144903800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:144898400-144904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:144898600-144903400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:144898600-144903800	Weak transcription	GM12878-XiMat	blood
46	chr6:144898600-144904000	Weak transcription	Right Ventricle	heart
47	chr6:144898600-144904400	Weak transcription	Fetal Intestine Large	intestine
48	chr6:144898600-144912800	Weak transcription	Gastric	stomach
49	chr6:144898800-144903200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:144899000-144902000	Strong transcription	HSMM	muscle

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