Variant report

Variant	rs11756963
Chromosome Location	chr6:144959409-144959410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10080939	0.81[EUR][1000 genomes]
rs10447422	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10457761	0.86[CHB][hapmap]
rs10457764	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10499230	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155359	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155367	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11155369	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12190718	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12192622	1.00[JPT][hapmap]
rs12198720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200263	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12202539	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12204734	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12209699	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12209795	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12209889	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12212056	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17793570	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1918749	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34810766	0.80[EUR][1000 genomes]
rs4259269	0.84[CEU][hapmap]
rs6570634	0.85[CHB][hapmap]
rs6912724	0.85[CHB][hapmap]
rs6917268	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6917519	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6923281	0.80[EUR][1000 genomes]
rs7773603	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs9321976	0.86[CHB][hapmap]
rs9497026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144914800-144960000	Weak transcription	Lung	lung
2	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:144946000-144961000	Weak transcription	Left Ventricle	heart
4	chr6:144946000-144965800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:144947000-144964800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
7	chr6:144948400-144973600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:144949000-144965200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
10	chr6:144950200-144973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:144951000-144974800	Weak transcription	Primary B cells from cord blood	blood
12	chr6:144951200-144974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:144951600-144975000	Weak transcription	Primary T cells from cord blood	blood
14	chr6:144951800-144977600	Weak transcription	Dnd41	blood
15	chr6:144952600-144974600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:144953000-144960200	Weak transcription	Fetal Heart	heart
17	chr6:144955400-144961000	Weak transcription	Fetal Lung	lung
18	chr6:144955600-144961000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:144956600-144965000	Weak transcription	HepG2	liver
20	chr6:144957000-144966600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:144958000-144961200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:144958200-144959600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:144958400-144962400	Weak transcription	Ovary	ovary
24	chr6:144958400-144964800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:144958800-144959600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:144959000-144965800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:144959400-144959800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:144959400-144962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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