Variant report

Variant	rs7773603
Chromosome Location	chr6:144917406-144917407
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144862779..144865501-chr6:144917245..144920128,2	K562	blood:
2	chr6:144862779..144865501-chr6:144916881..144920128,3	K562	blood:
3	chr6:144912593..144916364-chr6:144916671..144919134,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10080939	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10447422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10457761	0.86[CHB][hapmap]
rs10457764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10499230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11155359	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155367	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11155369	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11756963	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12190718	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12192622	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12198720	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12200263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202537	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs12202539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12204734	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12205460	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209699	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12209889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073869	0.86[EUR][1000 genomes]
rs17793570	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1918749	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28588721	0.81[EUR][1000 genomes]
rs34810766	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4259269	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs4460225	0.86[EUR][1000 genomes]
rs4615409	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56264877	0.86[EUR][1000 genomes]
rs60530618	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570634	0.85[CHB][hapmap]
rs6912724	0.85[CHB][hapmap]
rs6917268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917519	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6923281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942069	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73600166	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73600170	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73603015	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321976	0.86[CHB][hapmap]
rs9497026	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs951572	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:144885800-144943400	Weak transcription	Ovary	ovary
3	chr6:144899600-144931800	Weak transcription	Esophagus	oesophagus
4	chr6:144904400-144931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:144904400-144931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:144904600-144921600	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:144904600-144923600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:144904600-144939800	Weak transcription	HSMMtube	muscle
9	chr6:144904800-144921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:144904800-144929000	Weak transcription	Left Ventricle	heart
11	chr6:144904800-144935400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:144905400-144923200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:144905400-144923400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:144905800-144922200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:144906400-144918600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:144906400-144922800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:144908600-144922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:144908600-144922800	Weak transcription	Osteobl	bone
19	chr6:144908800-144917600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
21	chr6:144909400-144931000	Weak transcription	Aorta	Aorta
22	chr6:144910400-144924600	Weak transcription	Fetal Kidney	kidney
23	chr6:144912600-144920800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:144912600-144923600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:144912800-144922600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:144913200-144921400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:144914600-144921400	Weak transcription	Adipose Nuclei	Adipose
28	chr6:144914800-144917600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:144914800-144918400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:144914800-144918400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:144914800-144919400	Weak transcription	Dnd41	blood
32	chr6:144914800-144921200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:144914800-144921400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:144914800-144921400	Weak transcription	Primary T cells from cord blood	blood
35	chr6:144914800-144921400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:144914800-144921400	Weak transcription	Liver	Liver
37	chr6:144914800-144921600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:144914800-144921600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:144914800-144921600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:144914800-144921800	Weak transcription	Fetal Lung	lung
41	chr6:144914800-144921800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr6:144914800-144922800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:144914800-144923200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:144914800-144929400	Weak transcription	Fetal Thymus	thymus
45	chr6:144914800-144937800	Weak transcription	HSMM	muscle
46	chr6:144914800-144960000	Weak transcription	Lung	lung
47	chr6:144915000-144920600	Weak transcription	HepG2	liver
48	chr6:144915000-144921800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:144915000-144934400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:144915200-144921400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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