Variant report

Variant	rs9321976
Chromosome Location	chr6:144800070-144800071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10447422	0.85[CHB][hapmap]
rs10457761	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10457764	0.85[CHB][hapmap]
rs10499230	0.85[CHB][hapmap]
rs11155359	0.86[CHB][hapmap]
rs11756963	0.86[CHB][hapmap]
rs12190718	0.86[CHB][hapmap]
rs12197654	0.95[ASN][1000 genomes]
rs12198720	0.85[CHB][hapmap]
rs12200263	0.86[CHB][hapmap]
rs12202539	0.86[CHB][hapmap]
rs12209699	0.85[CHB][hapmap]
rs12209889	0.86[CHB][hapmap]
rs12214648	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17793570	0.86[CHB][hapmap]
rs1918749	0.85[CHB][hapmap]
rs4310077	0.90[ASN][1000 genomes]
rs4896724	0.86[EUR][1000 genomes]
rs4896725	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570634	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs6570635	0.93[ASN][1000 genomes]
rs6906483	0.89[EUR][1000 genomes]
rs6908911	0.89[EUR][1000 genomes]
rs6912724	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917268	0.86[CHB][hapmap]
rs6917519	0.86[CHB][hapmap]
rs6934971	0.95[ASN][1000 genomes]
rs7768823	0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7773603	0.86[CHB][hapmap]
rs9321977	0.89[EUR][1000 genomes]
rs9496982	0.89[EUR][1000 genomes]
rs9497026	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144741000-144801800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
3	chr6:144763000-144813800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:144764400-144838800	Weak transcription	A549	lung
5	chr6:144771400-144815800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:144771800-144811800	Weak transcription	Stomach Mucosa	stomach
7	chr6:144778600-144813800	Weak transcription	Hela-S3	cervix
8	chr6:144781000-144801000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:144781800-144806600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:144782000-144806600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:144782000-144806600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:144782000-144806600	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:144782000-144806600	Weak transcription	Spleen	Spleen
14	chr6:144782000-144809800	Weak transcription	Gastric	stomach
15	chr6:144782200-144806600	Weak transcription	Colonic Mucosa	Colon
16	chr6:144782400-144801200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:144782800-144801000	Weak transcription	NH-A	brain
18	chr6:144783800-144802800	Weak transcription	NHLF	lung
19	chr6:144784600-144812000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:144785000-144801000	Weak transcription	Right Ventricle	heart
21	chr6:144788600-144806400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:144788600-144808800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:144788800-144801000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:144788800-144801000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:144788800-144812000	Weak transcription	Esophagus	oesophagus
26	chr6:144788800-144821600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:144789400-144822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:144789600-144812200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:144790400-144802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:144792000-144810000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:144792200-144804400	Strong transcription	Fetal Thymus	thymus
32	chr6:144792400-144802600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:144792400-144815400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:144792400-144823800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr6:144792400-144824400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr6:144792400-144826000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr6:144792600-144802800	Strong transcription	HepG2	liver
38	chr6:144792600-144815400	Strong transcription	Primary B cells from cord blood	blood
39	chr6:144793000-144801000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:144793200-144814000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:144793400-144802800	Weak transcription	Ovary	ovary
42	chr6:144793800-144806600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:144794000-144802400	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:144794800-144802000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:144794800-144803200	Strong transcription	Dnd41	blood
46	chr6:144795400-144811200	Weak transcription	NHEK	skin
47	chr6:144795600-144822600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:144795800-144849800	Weak transcription	HMEC	breast
49	chr6:144796400-144800800	Weak transcription	HSMM	muscle
50	chr6:144796400-144800800	Weak transcription	HSMMtube	muscle

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