Variant report

Variant	rs9496982
Chromosome Location	chr6:144806691-144806692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10447422	0.93[GIH][hapmap]
rs10457761	0.90[EUR][1000 genomes]
rs10457764	0.93[GIH][hapmap]
rs10499230	0.93[GIH][hapmap]
rs12197654	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12202537	0.93[GIH][hapmap]
rs12204734	0.93[GIH][hapmap]
rs12209699	0.93[GIH][hapmap]
rs17073869	0.83[CHB][hapmap]
rs1918749	0.93[GIH][hapmap]
rs4259269	0.93[GIH][hapmap]
rs4310077	0.80[EUR][1000 genomes]
rs4584002	0.90[CEU][hapmap];0.98[GIH][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4896724	1.00[ASW][hapmap];0.95[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4896725	0.89[EUR][1000 genomes]
rs6570634	1.00[GIH][hapmap];0.80[MEX][hapmap]
rs6570635	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6906483	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6908911	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912724	0.97[GIH][hapmap];0.85[MEX][hapmap]
rs6934971	0.83[EUR][1000 genomes]
rs6935011	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941929	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7768823	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9321976	0.89[EUR][1000 genomes]
rs9321977	1.00[ASW][hapmap];0.90[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023014	chr6:144717963-144806691	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
2	chr6:144763000-144813800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:144764400-144838800	Weak transcription	A549	lung
4	chr6:144771400-144815800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:144771800-144811800	Weak transcription	Stomach Mucosa	stomach
6	chr6:144778600-144813800	Weak transcription	Hela-S3	cervix
7	chr6:144782000-144809800	Weak transcription	Gastric	stomach
8	chr6:144784600-144812000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:144788600-144808800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:144788800-144812000	Weak transcription	Esophagus	oesophagus
11	chr6:144788800-144821600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:144789400-144822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:144789600-144812200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:144792000-144810000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:144792400-144815400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:144792400-144823800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:144792400-144824400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr6:144792400-144826000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr6:144792600-144815400	Strong transcription	Primary B cells from cord blood	blood
20	chr6:144793200-144814000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:144795400-144811200	Weak transcription	NHEK	skin
22	chr6:144795600-144822600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:144795800-144849800	Weak transcription	HMEC	breast
24	chr6:144797400-144822000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:144797800-144806800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:144799000-144807000	Weak transcription	Placenta	Placenta
27	chr6:144799800-144816000	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:144800000-144829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:144800200-144815600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:144801200-144818200	Weak transcription	Fetal Heart	heart
31	chr6:144801600-144809800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:144801800-144808600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:144802000-144806800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:144802000-144809600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:144803200-144826800	Weak transcription	Fetal Brain Male	brain
36	chr6:144803400-144811200	Weak transcription	NHLF	lung
37	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:144803600-144813600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:144803800-144821800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:144804000-144815400	Strong transcription	Dnd41	blood
41	chr6:144804200-144815000	Strong transcription	HepG2	liver
42	chr6:144804200-144821400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:144804400-144814200	Strong transcription	Adipose Nuclei	Adipose
44	chr6:144804400-144815600	Strong transcription	Fetal Muscle Leg	muscle
45	chr6:144804600-144815800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:144804600-144816800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:144804600-144816800	Strong transcription	Left Ventricle	heart
48	chr6:144804800-144816800	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:144805000-144807600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:144805000-144821200	Strong transcription	Fetal Thymus	thymus

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