Variant report

Variant	rs10457761
Chromosome Location	chr6:144822128-144822129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10447422	0.85[CHB][hapmap]
rs10457764	0.85[CHB][hapmap]
rs10499230	0.85[CHB][hapmap]
rs11155359	0.86[CHB][hapmap]
rs11756963	0.86[CHB][hapmap]
rs12190718	0.86[CHB][hapmap]
rs12197654	0.95[ASN][1000 genomes]
rs12198720	0.85[CHB][hapmap]
rs12200263	0.86[CHB][hapmap]
rs12202539	0.86[CHB][hapmap]
rs12209699	0.85[CHB][hapmap]
rs12209889	0.86[CHB][hapmap]
rs12214648	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17793570	0.86[CHB][hapmap]
rs1918749	0.85[CHB][hapmap]
rs4310077	0.90[ASN][1000 genomes]
rs4896724	0.88[EUR][1000 genomes]
rs4896725	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570634	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs6570635	0.93[ASN][1000 genomes]
rs6906483	0.91[EUR][1000 genomes]
rs6908911	0.91[EUR][1000 genomes]
rs6912724	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917268	0.86[CHB][hapmap]
rs6917519	0.86[CHB][hapmap]
rs6934971	0.95[ASN][1000 genomes]
rs7768823	0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs7773603	0.86[CHB][hapmap]
rs9321976	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321977	0.91[EUR][1000 genomes]
rs9496982	0.90[EUR][1000 genomes]
rs9497026	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144764400-144838800	Weak transcription	A549	lung
2	chr6:144789400-144822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:144792400-144823800	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr6:144792400-144824400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr6:144792400-144826000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr6:144795600-144822600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:144795800-144849800	Weak transcription	HMEC	breast
8	chr6:144800000-144829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:144803200-144826800	Weak transcription	Fetal Brain Male	brain
10	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:144807200-144828800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
13	chr6:144808400-144822600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:144812000-144823000	Weak transcription	Small Intestine	intestine
15	chr6:144812400-144825400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:144812400-144835000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:144812400-144840400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:144812400-144844800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
20	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:144812600-144849600	Weak transcription	NH-A	brain
22	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:144813400-144825600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
25	chr6:144813600-144824000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:144813600-144828800	Weak transcription	Right Ventricle	heart
27	chr6:144813600-144834800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:144814600-144822600	Strong transcription	Adipose Nuclei	Adipose
29	chr6:144814800-144834000	Weak transcription	NHLF	lung
30	chr6:144815000-144836200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
32	chr6:144815200-144822400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:144815200-144835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:144815200-144881000	Weak transcription	NHEK	skin
35	chr6:144815400-144828600	Weak transcription	Ovary	ovary
36	chr6:144816600-144829200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:144816800-144824400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:144817000-144823200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:144817000-144823400	Strong transcription	HepG2	liver
41	chr6:144817000-144825000	Strong transcription	Primary T cells from cord blood	blood
42	chr6:144817000-144826000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr6:144817400-144825800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:144817400-144826400	Strong transcription	Primary B cells from cord blood	blood
45	chr6:144817600-144822400	Strong transcription	Fetal Kidney	kidney
46	chr6:144817600-144823600	Strong transcription	Dnd41	blood
47	chr6:144817800-144822400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:144817800-144822400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr6:144818000-144822400	Strong transcription	Gastric	stomach
50	chr6:144818800-144822600	Weak transcription	Fetal Intestine Small	intestine

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