Variant report

Variant	rs11155367
Chromosome Location	chr6:144979327-144979328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr6:144978872-144979453	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
UTRN	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10447422	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10457764	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10499230	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11155359	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11155369	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756963	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12190718	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12192622	1.00[JPT][hapmap]
rs12198720	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12200263	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12202539	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12204734	1.00[JPT][hapmap]
rs12209699	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12209795	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209889	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12212056	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17793570	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1918749	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4259269	0.84[CEU][hapmap]
rs6917268	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6917519	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7759754	0.85[MEX][hapmap]
rs7761155	0.85[MEX][hapmap]
rs7773603	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9497026	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
2	chr6:144962800-144980200	Weak transcription	Ovary	ovary
3	chr6:144965600-144982400	Weak transcription	HSMM	muscle
4	chr6:144967200-144982000	Weak transcription	HSMMtube	muscle
5	chr6:144967800-144980400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:144968200-144982000	Weak transcription	Brain Germinal Matrix	brain
7	chr6:144973600-144980400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:144973600-144980400	Weak transcription	Colonic Mucosa	Colon
9	chr6:144974000-144980200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:144975400-144980200	Weak transcription	Stomach Mucosa	stomach
11	chr6:144975400-144980400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:144975600-144979800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:144975600-144980000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:144975600-144980000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:144975600-144980200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:144975600-144980400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:144975600-144980400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:144975600-144981000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:144975800-144980000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:144975800-144980000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:144975800-144980000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:144975800-144980200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:144976000-144980200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:144976000-144980200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:144976000-144980200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:144976000-144980400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:144976000-144980600	Weak transcription	Fetal Stomach	stomach
28	chr6:144976600-144979600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:144976600-144980000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:144976600-144980200	Weak transcription	Fetal Lung	lung
31	chr6:144976600-144980200	Weak transcription	NHDF-Ad	bronchial
32	chr6:144976600-144980400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:144976600-144980400	Weak transcription	Liver	Liver
34	chr6:144976800-144980200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:144977000-144980400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:144977800-144980400	Weak transcription	Left Ventricle	heart
37	chr6:144977800-144985400	Weak transcription	Gastric	stomach
38	chr6:144978200-144981200	Enhancers	Dnd41	blood
39	chr6:144978400-144979400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:144978400-144979400	Enhancers	NHEK	skin
41	chr6:144978400-144980200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:144978400-144981200	Enhancers	HepG2	liver
43	chr6:144978400-144982400	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr6:144978400-144983800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr6:144978600-144979400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:144978600-144979400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:144978600-144979400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:144978600-144979800	Enhancers	A549	lung
49	chr6:144978600-144980600	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr6:144978600-144981000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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