Variant report

Variant	rs55833428
Chromosome Location	chr22:34300494-34300495
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10427743	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16993014	0.85[AMR][1000 genomes]
rs16993257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16993269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4525791	0.85[AMR][1000 genomes]
rs55883936	0.87[AMR][1000 genomes]
rs58484073	0.87[AMR][1000 genomes]
rs59015613	0.85[AMR][1000 genomes]
rs59027659	0.87[AMR][1000 genomes]
rs59594190	0.85[AMR][1000 genomes]
rs60848515	0.85[AMR][1000 genomes]
rs7287539	1.00[AMR][1000 genomes]
rs7290245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406608	0.85[AMR][1000 genomes]
rs73406612	0.87[AMR][1000 genomes]
rs73406614	0.87[AMR][1000 genomes]
rs73406626	0.85[AMR][1000 genomes]
rs73406702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408411	1.00[AMR][1000 genomes]
rs8135517	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1061736	chr22:34178034-34394918	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv544689	chr22:34178034-34394918	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1066419	chr22:34231732-34553006	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv544690	chr22:34231732-34553006	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3343210	chr22:34236744-34404210	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv588938	chr22:34270568-34307875	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34288200-34303000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr22:34290200-34303800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr22:34291000-34304200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr22:34291200-34304200	Weak transcription	Brain Anterior Caudate	brain
5	chr22:34291200-34312800	Weak transcription	HepG2	liver
6	chr22:34291600-34303400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr22:34291800-34305000	Weak transcription	Fetal Intestine Small	intestine
8	chr22:34291800-34313800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr22:34292000-34304000	Weak transcription	Fetal Stomach	stomach
10	chr22:34293600-34300600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr22:34293800-34306200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr22:34293800-34315000	Weak transcription	Pancreas	Pancrea
13	chr22:34294200-34310400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr22:34295800-34304000	Weak transcription	GM12878-XiMat	blood
15	chr22:34296000-34304800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr22:34296000-34304800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr22:34296400-34304800	Weak transcription	Brain Hippocampus Middle	brain
18	chr22:34296600-34303000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr22:34296600-34304000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr22:34296600-34304000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr22:34296600-34313400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr22:34296800-34304200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr22:34297400-34304400	Weak transcription	Brain Angular Gyrus	brain
24	chr22:34297400-34305200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr22:34297400-34313800	Weak transcription	Gastric	stomach
26	chr22:34297600-34303000	Weak transcription	Right Atrium	heart
27	chr22:34297800-34304200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr22:34298200-34305800	Weak transcription	Adipose Nuclei	Adipose
29	chr22:34298400-34307000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr22:34298600-34303000	Weak transcription	Colon Smooth Muscle	Colon
31	chr22:34298600-34304000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr22:34298600-34306600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr22:34298600-34306800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr22:34298800-34302800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr22:34298800-34304200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr22:34298800-34310000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr22:34299000-34300600	Weak transcription	Esophagus	oesophagus
38	chr22:34299000-34303200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr22:34299000-34303600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr22:34299000-34303800	Weak transcription	Lung	lung
41	chr22:34299200-34302800	Weak transcription	Fetal Heart	heart
42	chr22:34299200-34302800	Weak transcription	Right Ventricle	heart
43	chr22:34299200-34304200	Weak transcription	Ovary	ovary
44	chr22:34299800-34300600	Enhancers	Spleen	Spleen
45	chr22:34300000-34301400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr22:34300400-34300600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr22:34300400-34300600	Enhancers	Rectal Smooth Muscle	rectum
48	chr22:34300400-34300800	Enhancers	Left Ventricle	heart

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