Variant report

Variant	rs73406608
Chromosome Location	chr22:34227065-34227066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:34226044..34229431-chr22:34231299..34234951,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1013337	0.85[AMR][1000 genomes]
rs10427743	0.85[AMR][1000 genomes]
rs16993014	1.00[AMR][1000 genomes]
rs16993101	0.85[AMR][1000 genomes]
rs16993257	0.85[AMR][1000 genomes]
rs16993269	0.85[AMR][1000 genomes]
rs28714114	0.85[AMR][1000 genomes]
rs4525791	1.00[AMR][1000 genomes]
rs55833428	0.85[AMR][1000 genomes]
rs58888938	0.83[AMR][1000 genomes]
rs58948382	0.85[AMR][1000 genomes]
rs59015613	1.00[AMR][1000 genomes]
rs59594190	1.00[AMR][1000 genomes]
rs5994799	0.85[AMR][1000 genomes]
rs5999094	0.85[AMR][1000 genomes]
rs5999104	0.85[AMR][1000 genomes]
rs5999112	0.85[AMR][1000 genomes]
rs60848515	1.00[AMR][1000 genomes]
rs7284260	0.85[AMR][1000 genomes]
rs7287539	0.85[AMR][1000 genomes]
rs7290245	0.85[AMR][1000 genomes]
rs73402852	0.83[AMR][1000 genomes]
rs73402876	0.83[AMR][1000 genomes]
rs73402881	0.83[AMR][1000 genomes]
rs73404896	0.86[AFR][1000 genomes]
rs73406626	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406702	0.85[AMR][1000 genomes]
rs73408411	0.85[AMR][1000 genomes]
rs8135517	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8136512	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv914991	chr22:34106384-34293516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1056553	chr22:34116979-34286191	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv914992	chr22:34135007-34283144	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv524156	chr22:34145596-34260738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1064781	chr22:34152145-34231792	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv529886	chr22:34153740-34258847	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1061736	chr22:34178034-34394918	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv544689	chr22:34178034-34394918	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34200600-34234200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr22:34213000-34228000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr22:34213200-34232200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr22:34216800-34227400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr22:34219800-34227400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr22:34219800-34228400	Weak transcription	Esophagus	oesophagus
7	chr22:34219800-34231800	Weak transcription	Aorta	Aorta
8	chr22:34220000-34227800	Weak transcription	Colon Smooth Muscle	Colon
9	chr22:34220000-34228000	Weak transcription	Stomach Mucosa	stomach
10	chr22:34220000-34228400	Weak transcription	Brain Substantia Nigra	brain
11	chr22:34220600-34227800	Weak transcription	Ovary	ovary
12	chr22:34221000-34227800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr22:34221200-34231400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr22:34221600-34228600	Weak transcription	Liver	Liver
15	chr22:34221800-34228400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr22:34222000-34227800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr22:34222200-34227800	Weak transcription	Brain Angular Gyrus	brain
18	chr22:34222200-34231200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr22:34224200-34228400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr22:34224400-34227600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr22:34224800-34229600	Enhancers	Fetal Heart	heart
22	chr22:34224800-34232000	Weak transcription	Fetal Intestine Small	intestine
23	chr22:34225000-34229000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr22:34225200-34228200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr22:34225200-34228800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr22:34225200-34229000	Enhancers	Left Ventricle	heart
27	chr22:34225200-34229200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr22:34225600-34228000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr22:34225600-34228400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr22:34225600-34228600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr22:34225600-34228600	Enhancers	Spleen	Spleen
32	chr22:34225600-34229000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr22:34225600-34229000	Enhancers	Lung	lung
34	chr22:34225800-34228400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr22:34225800-34228400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr22:34225800-34228600	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr22:34225800-34228600	Enhancers	Right Atrium	heart
38	chr22:34225800-34228800	Enhancers	Fetal Stomach	stomach
39	chr22:34225800-34229200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr22:34225800-34229600	Enhancers	Right Ventricle	heart
41	chr22:34226200-34227400	Weak transcription	Psoas Muscle	Psoas
42	chr22:34226200-34227600	Weak transcription	Fetal Brain Male	brain
43	chr22:34226200-34228400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr22:34226400-34227800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr22:34226400-34227800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr22:34226400-34227800	Weak transcription	Fetal Muscle Leg	muscle
47	chr22:34226400-34228000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr22:34226400-34229000	Enhancers	Brain Anterior Caudate	brain
49	chr22:34226600-34227600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr22:34226600-34227800	Weak transcription	Colonic Mucosa	Colon

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