Variant report

Variant rs558334283
Chromosome Location chr1:57004209-57004210
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56987000-57015000 Genic enhancers NHDF-Ad bronchial
2 chr1:56992800-57011200 Weak transcription Stomach Mucosa stomach
3 chr1:56993000-57004600 Weak transcription Hela-S3 cervix
4 chr1:56993600-57007800 Weak transcription Primary B cells from cord blood blood
5 chr1:56994000-57012400 Weak transcription Fetal Brain Male brain
6 chr1:56994000-57012800 Weak transcription Fetal Brain Female brain
7 chr1:56994200-57004400 Strong transcription Muscle Satellite Cultured Cells --
8 chr1:56995600-57004600 Weak transcription Colon Smooth Muscle Colon
9 chr1:56996600-57005200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:56997200-57004600 Genic enhancers Placenta Placenta
11 chr1:56997600-57004400 Genic enhancers Fetal Muscle Leg muscle
12 chr1:56999400-57012800 Weak transcription HSMMtube muscle
13 chr1:57000200-57005000 Weak transcription Rectal Smooth Muscle rectum
14 chr1:57000200-57008200 Weak transcription Fetal Kidney kidney
15 chr1:57000400-57011000 Weak transcription Gastric stomach
16 chr1:57000400-57013000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:57000600-57005400 Weak transcription Colonic Mucosa Colon
18 chr1:57001200-57018800 Weak transcription A549 lung
19 chr1:57001400-57004600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:57001800-57018600 Weak transcription Small Intestine intestine
21 chr1:57001800-57021800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr1:57002200-57004400 Weak transcription Primary neutrophils fromperipheralblood blood
23 chr1:57002200-57004400 Enhancers Psoas Muscle Psoas
24 chr1:57002400-57004600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:57002400-57005200 Weak transcription Aorta Aorta
26 chr1:57002400-57008600 Enhancers Brain Hippocampus Middle brain
27 chr1:57002600-57004600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:57002600-57005200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:57002600-57005200 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr1:57002600-57006600 Enhancers Right Atrium heart
31 chr1:57002600-57008600 Enhancers Brain Anterior Caudate brain
32 chr1:57002800-57004400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
33 chr1:57002800-57004400 Weak transcription Stomach Smooth Muscle stomach
34 chr1:57002800-57004600 Enhancers Skeletal Muscle Male skeletal muscle
35 chr1:57002800-57004800 Weak transcription Fetal Heart heart
36 chr1:57002800-57006400 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:57002800-57006600 Enhancers H9 Cell Line embryonic stem cell
38 chr1:57002800-57006800 Enhancers HUES48 Cell Line embryonic stem cell
39 chr1:57002800-57006800 Enhancers Fetal Intestine Small intestine
40 chr1:57002800-57013200 Weak transcription Placenta Amnion Placenta Amnion
41 chr1:57002800-57018600 Weak transcription Thymus Thymus
42 chr1:57003000-57004600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:57003000-57005000 Weak transcription ES-WA7 Cell Line embryonic stem cell
44 chr1:57003000-57006800 Enhancers iPS-15b Cell Line embryonic stem cell
45 chr1:57003000-57006800 Enhancers iPS-18 Cell Line embryonic stem cell
46 chr1:57003000-57007200 Enhancers Fetal Adrenal Gland Adrenal Gland
47 chr1:57003000-57007600 Enhancers Adipose Nuclei Adipose
48 chr1:57003000-57008000 Enhancers HUES64 Cell Line embryonic stem cell
49 chr1:57003000-57008600 Enhancers H1 Cell Line embryonic stem cell
50 chr1:57003200-57007600 Enhancers Brain Substantia Nigra brain

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