Variant report

Variant	rs55836209
Chromosome Location	chr8:121078236-121078237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:121075869..121078557-chr8:121082699..121085072,2	K562	blood:
2	chr8:121075759..121078514-chr8:121080982..121082619,2	K562	blood:
3	chr8:120884416..120888306-chr8:121077205..121080012,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245330	Chromatin interaction
ENSG00000155792	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56771259	1.00[AFR][1000 genomes]
rs61607910	1.00[AFR][1000 genomes]
rs61672327	1.00[AFR][1000 genomes]
rs73706221	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121060600-121085000	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:121070800-121082200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr8:121073200-121080400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:121073200-121080800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:121073200-121081400	Weak transcription	Psoas Muscle	Psoas
6	chr8:121073400-121081800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:121073600-121079200	Weak transcription	NHEK	skin
8	chr8:121073600-121080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:121073600-121080200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:121073600-121080200	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:121074200-121081800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:121075600-121083000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:121075600-121083000	Enhancers	Stomach Mucosa	stomach
14	chr8:121075600-121095800	Weak transcription	Gastric	stomach
15	chr8:121076000-121085400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:121076600-121078600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:121076600-121083200	Enhancers	Fetal Intestine Large	intestine
18	chr8:121077000-121080600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr8:121077200-121078400	Enhancers	Fetal Lung	lung
20	chr8:121077200-121078800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:121077200-121081800	Enhancers	Duodenum Mucosa	Duodenum
22	chr8:121077200-121083200	Enhancers	Fetal Intestine Small	intestine
23	chr8:121077400-121078400	Enhancers	Osteobl	bone
24	chr8:121077400-121078600	Enhancers	Brain Anterior Caudate	brain
25	chr8:121077400-121078600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr8:121077400-121078800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:121077600-121078600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr8:121077600-121079200	Enhancers	Placenta	Placenta
29	chr8:121077600-121079600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr8:121077600-121079600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr8:121077800-121078600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:121077800-121078600	Enhancers	Primary B cells from cord blood	blood
33	chr8:121077800-121078600	Enhancers	Fetal Thymus	thymus
34	chr8:121077800-121080000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:121077800-121080000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:121078000-121079000	Weak transcription	Liver	Liver
37	chr8:121078000-121079000	Weak transcription	Fetal Kidney	kidney
38	chr8:121078200-121078600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:121078200-121079400	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr8:121078200-121082600	Enhancers	Primary hematopoietic stem cells	blood

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