Variant report

Variant	rs55841179
Chromosome Location	chr14:25099292-25099293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2236336	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59446155	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60866989	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74039184	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8192922	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901502	chr14:25074711-25101706	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25094000-25099600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:25094000-25100400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:25097000-25100200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:25098600-25099800	Weak transcription	Brain Germinal Matrix	brain
5	chr14:25099200-25099600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr14:25099200-25100400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:25099200-25100800	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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