Variant report

Variant	rs8192922
Chromosome Location	chr14:25099758-25099759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2236336	1.00[CEU][hapmap]
rs55841179	0.93[AMR][1000 genomes]
rs59268439	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901502	chr14:25074711-25101706	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8192922	IGHD	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25094000-25100400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:25097000-25100200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:25098600-25099800	Weak transcription	Brain Germinal Matrix	brain
4	chr14:25099200-25100400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr14:25099200-25100800	Enhancers	Esophagus	oesophagus
6	chr14:25099400-25099800	Enhancers	Lung	lung
7	chr14:25099400-25101200	Enhancers	Gastric	stomach
8	chr14:25099400-25101400	Enhancers	Pancreas	Pancrea
9	chr14:25099400-25102200	Enhancers	Fetal Intestine Small	intestine
10	chr14:25099600-25100600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:25099600-25100600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr14:25099600-25100600	Enhancers	Fetal Intestine Large	intestine
13	chr14:25099600-25100600	Enhancers	Fetal Lung	lung
14	chr14:25099600-25100800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:25099600-25100800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:25099600-25100800	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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