Variant report

Variant	rs558431344
Chromosome Location	chr15:51855396-51855397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51843037..51845513-chr15:51854667..51856394,2	K562	blood:
2	chr15:51854337..51857092-chr15:51860809..51862898,2	K562	blood:
3	chr15:51855034..51858623-chr15:51869913..51872025,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv904218	chr15:51743186-51873407	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv569405	chr15:51791559-51890282	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv457138	chr15:51838719-51890282	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv569406	chr15:51838719-51890282	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
8	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
9	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51780400-51855800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:51781400-51863000	Weak transcription	HSMM	muscle
3	chr15:51787400-51855400	Weak transcription	Osteobl	bone
4	chr15:51794600-51861000	Weak transcription	Gastric	stomach
5	chr15:51816000-51861000	Weak transcription	Pancreas	Pancrea
6	chr15:51817800-51862200	Weak transcription	Fetal Brain Male	brain
7	chr15:51818200-51855400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:51818200-51861600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:51818400-51861200	Weak transcription	Fetal Stomach	stomach
10	chr15:51819600-51861400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:51819800-51863000	Weak transcription	Right Ventricle	heart
12	chr15:51824600-51860600	Weak transcription	Brain Anterior Caudate	brain
13	chr15:51824600-51861000	Weak transcription	Left Ventricle	heart
14	chr15:51824800-51863200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:51827000-51861600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:51827400-51859800	Weak transcription	Fetal Intestine Small	intestine
17	chr15:51828600-51861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:51828800-51868000	Weak transcription	Adipose Nuclei	Adipose
19	chr15:51828800-51868200	Weak transcription	Fetal Intestine Large	intestine
20	chr15:51829000-51856000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:51829000-51857000	Weak transcription	NHDF-Ad	bronchial
22	chr15:51829000-51859800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:51829000-51861000	Weak transcription	Fetal Lung	lung
24	chr15:51829000-51868800	Weak transcription	A549	lung
25	chr15:51829200-51861000	Weak transcription	Placenta	Placenta
26	chr15:51829400-51860600	Weak transcription	Fetal Brain Female	brain
27	chr15:51829400-51863200	Weak transcription	Dnd41	blood
28	chr15:51830000-51861000	Weak transcription	K562	blood
29	chr15:51831400-51868800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:51836400-51861400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:51836800-51858000	Weak transcription	Liver	Liver
32	chr15:51836800-51869000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr15:51839400-51868600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:51846600-51861000	Weak transcription	HepG2	liver
35	chr15:51849600-51861000	Weak transcription	Spleen	Spleen
36	chr15:51850600-51861000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:51850800-51867400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:51851400-51868200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:51851800-51865600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:51852000-51856200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:51852600-51861000	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr15:51853400-51855400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:51853800-51861000	Weak transcription	Lung	lung
44	chr15:51853800-51861200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:51853800-51861600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:51853800-51863200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:51854000-51855600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:51854000-51868800	Weak transcription	Ovary	ovary
49	chr15:51854600-51855600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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