Variant report

Variant	rs558446233
Chromosome Location	chr5:94958129-94958130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94951476..94954294-chr5:94957994..94960881,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3421596	chr5:94954196-94958694	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1842645	chr5:94955602-94962981	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3340930	chr5:94955821-94958369	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1793809	chr5:94956266-94962981	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1795334	chr5:94956266-94962981	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv598958	chr5:94956345-94962981	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv598959	chr5:94956345-94963181	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3423974	chr5:94957680-94958139	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94954800-94958600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:94955400-94958200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr5:94957000-94958200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr5:94957000-94958200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
5	chr5:94957000-94958200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:94957200-94958200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:94957200-94958200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr5:94957200-94958200	Enhancers	Spleen	Spleen
9	chr5:94957200-94958400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:94957200-94958600	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr5:94957200-94958600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr5:94957200-94958600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr5:94957200-94958600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:94957400-94958200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:94957400-94958200	Enhancers	Brain Substantia Nigra	brain
16	chr5:94957400-94958200	Bivalent Enhancer	Fetal Intestine Large	intestine
17	chr5:94957400-94958200	Enhancers	Pancreas	Pancrea
18	chr5:94957400-94958400	Bivalent Enhancer	Fetal Thymus	thymus
19	chr5:94957400-94958400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr5:94957400-94958600	Enhancers	Primary B cells from peripheral blood	blood
21	chr5:94957600-94958200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:94957600-94958200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:94957600-94958200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:94957600-94958200	Enhancers	Adipose Nuclei	Adipose
25	chr5:94957600-94958200	Enhancers	Duodenum Mucosa	Duodenum
26	chr5:94957600-94958200	Enhancers	Placenta	Placenta
27	chr5:94957600-94958800	Enhancers	Primary B cells from cord blood	blood
28	chr5:94957600-94959200	Enhancers	Primary hematopoietic stem cells	blood
29	chr5:94957800-94958400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr5:94957800-94958400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr5:94957800-94958400	Enhancers	GM12878-XiMat	blood
32	chr5:94957800-94958400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
33	chr5:94957800-94958600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr5:94957800-94963600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:94957800-94967200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr5:94958000-94958200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr5:94958000-94958200	Weak transcription	Fetal Intestine Small	intestine
38	chr5:94958000-94958400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:94958000-94958600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr5:94958000-94958800	Enhancers	Dnd41	blood
41	chr5:94958000-94959400	Enhancers	Thymus	Thymus

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