Variant report

Variant	rs55844758
Chromosome Location	chr22:31034084-31034085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11914089	0.99[ASN][1000 genomes]
rs12168004	0.96[ASN][1000 genomes]
rs13433541	0.96[ASN][1000 genomes]
rs16988936	0.97[ASN][1000 genomes]
rs2013928	0.99[ASN][1000 genomes]
rs2072195	0.88[ASN][1000 genomes]
rs2267165	0.82[ASN][1000 genomes]
rs2267166	0.83[ASN][1000 genomes]
rs5994329	0.92[ASN][1000 genomes]
rs5997719	0.99[ASN][1000 genomes]
rs5997728	0.92[ASN][1000 genomes]
rs72558391	0.88[ASN][1000 genomes]
rs73398305	0.83[ASN][1000 genomes]
rs8135379	0.96[ASN][1000 genomes]
rs8135450	0.97[ASN][1000 genomes]
rs8141515	0.83[ASN][1000 genomes]
rs9306264	0.96[ASN][1000 genomes]
rs9606761	0.90[ASN][1000 genomes]
rs9606762	0.89[ASN][1000 genomes]
rs9619128	0.94[ASN][1000 genomes]
rs9621051	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31030600-31034200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr22:31030600-31034200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr22:31030600-31034400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr22:31031600-31034200	Active TSS	HSMM	muscle
5	chr22:31032200-31034200	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr22:31032400-31052400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr22:31032800-31046600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:31033200-31034200	Enhancers	Ovary	ovary
9	chr22:31033200-31034200	Enhancers	Spleen	Spleen
10	chr22:31033200-31036400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr22:31033200-31039200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr22:31033200-31052000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr22:31033400-31034200	Enhancers	Duodenum Mucosa	Duodenum
14	chr22:31033400-31036400	Weak transcription	Psoas Muscle	Psoas
15	chr22:31033400-31036600	Weak transcription	Fetal Heart	heart
16	chr22:31033400-31058200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr22:31033600-31058000	Weak transcription	Adipose Nuclei	Adipose
18	chr22:31033600-31058000	Weak transcription	Fetal Lung	lung
19	chr22:31033800-31036400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr22:31033800-31039000	Weak transcription	HSMMtube	muscle
21	chr22:31033800-31039400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr22:31033800-31039400	Weak transcription	NHLF	lung
23	chr22:31033800-31042600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr22:31033800-31046600	Weak transcription	Fetal Intestine Small	intestine
25	chr22:31033800-31057600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr22:31034000-31034200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr22:31034000-31034200	Active TSS	Muscle Satellite Cultured Cells	--
28	chr22:31034000-31034200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr22:31034000-31034200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr22:31034000-31034200	Enhancers	Colon Smooth Muscle	Colon
31	chr22:31034000-31034200	Enhancers	Rectal Smooth Muscle	rectum
32	chr22:31034000-31034200	Enhancers	Hela-S3	cervix
33	chr22:31034000-31034200	Active TSS	NHDF-Ad	bronchial
34	chr22:31034000-31034400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:31034000-31034400	Enhancers	Brain Substantia Nigra	brain
36	chr22:31034000-31034600	Enhancers	Brain Cingulate Gyrus	brain
37	chr22:31034000-31034800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr22:31034000-31035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr22:31034000-31036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr22:31034000-31036400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr22:31034000-31036400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr22:31034000-31036400	Weak transcription	Brain Anterior Caudate	brain
43	chr22:31034000-31036400	Weak transcription	Right Atrium	heart
44	chr22:31034000-31036400	Weak transcription	Right Ventricle	heart
45	chr22:31034000-31036400	Weak transcription	GM12878-XiMat	blood
46	chr22:31034000-31036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr22:31034000-31036600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr22:31034000-31036600	Weak transcription	Brain Angular Gyrus	brain
49	chr22:31034000-31036600	Weak transcription	Esophagus	oesophagus
50	chr22:31034000-31036600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links