Variant report
| Variant | rs55845081 |
|---|---|
| Chromosome Location | chr1:158484972-158484973 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OR10R2-1 | chr1:158484575-158485715 | NONHSAT006988 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs16840479 | 1.00[AMR][1000 genomes] |
| rs60639078 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61641123 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61751724 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs62642485 | 0.96[AFR][1000 genomes] |
| rs6697181 | 1.00[AMR][1000 genomes] |
| rs73027778 | 0.91[AFR][1000 genomes] |
| rs73029545 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001046 | chr1:158461563-158503338 | Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv470743 | chr1:158484285-158521392 | Weak transcription Enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv437202 | chr1:158484378-158493154 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
