Variant report
| Variant | rs61641123 |
|---|---|
| Chromosome Location | chr1:158484558-158484559 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr1:158484319-158484561 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR10R1P | TF binding region |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs16840479 | 1.00[AMR][1000 genomes] |
| rs55845081 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60639078 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61751724 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs62642485 | 0.91[AFR][1000 genomes] |
| rs6697181 | 1.00[AMR][1000 genomes] |
| rs73027778 | 0.87[AFR][1000 genomes] |
| rs73029545 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001046 | chr1:158461563-158503338 | Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv470743 | chr1:158484285-158521392 | Weak transcription Enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv437202 | chr1:158484378-158493154 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
