Variant report

Variant	rs55847639
Chromosome Location	chr12:121505987-121505988
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10492051	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1180008	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17433716	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17512249	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1796415	0.81[EUR][1000 genomes]
rs28360439	0.89[AMR][1000 genomes]
rs28969463	0.81[EUR][1000 genomes]
rs3850517	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4083358	0.99[EUR][1000 genomes]
rs41416850	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4445718	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55728984	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55817936	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55846109	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56156773	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56159890	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7312738	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73214189	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73214193	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214200	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73214202	0.97[EUR][1000 genomes]
rs73216105	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73216108	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73216109	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73216110	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73216131	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218207	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218210	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218221	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv899561	chr12:121376416-121525591	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	esv2758318	chr12:121415845-121584813	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	esv2759917	chr12:121415845-121584813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1039216	chr12:121421701-121538491	Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv832531	chr12:121440495-121604232	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv560454	chr12:121457073-121745742	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
11	nsv430537	chr12:121487632-121579955	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121504000-121507600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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