Variant report

Variant	rs55850160
Chromosome Location	chr1:168771181-168771182
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168771076..168773602-chr1:168775247..168778222,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55739250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57448260	1.00[AMR][1000 genomes]
rs58266358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60826509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74121393	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168755600-168772800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:168769000-168771600	Enhancers	Duodenum Mucosa	Duodenum
3	chr1:168769000-168772000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:168769000-168773800	Enhancers	Fetal Intestine Large	intestine
5	chr1:168769200-168772600	Enhancers	HepG2	liver
6	chr1:168769200-168774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:168769400-168773000	Enhancers	Hela-S3	cervix
8	chr1:168770000-168771400	Weak transcription	Fetal Kidney	kidney
9	chr1:168770000-168772400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:168770000-168773400	Weak transcription	A549	lung
11	chr1:168770200-168771200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:168770200-168771800	Enhancers	Liver	Liver
13	chr1:168770400-168771400	Weak transcription	Small Intestine	intestine
14	chr1:168770400-168772200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:168770400-168772400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:168770400-168772600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:168770400-168773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:168770400-168773200	Weak transcription	Gastric	stomach
19	chr1:168770600-168771400	Weak transcription	Pancreas	Pancrea
20	chr1:168770600-168771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:168770600-168772800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:168770600-168773400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:168770800-168771200	Weak transcription	Fetal Intestine Small	intestine
24	chr1:168771000-168772200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:168771000-168773200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:168771000-168773600	Enhancers	Stomach Mucosa	stomach

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