Variant report

Variant	rs57448260
Chromosome Location	chr1:168774129-168774130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55739250	1.00[AMR][1000 genomes]
rs55850160	1.00[AMR][1000 genomes]
rs58266358	1.00[AMR][1000 genomes]
rs60826509	1.00[AMR][1000 genomes]
rs74121384	1.00[AMR][1000 genomes]
rs74121386	1.00[AMR][1000 genomes]
rs74121387	1.00[AMR][1000 genomes]
rs74121388	1.00[AMR][1000 genomes]
rs74121393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168769200-168774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:168771200-168774200	Enhancers	Fetal Intestine Small	intestine
3	chr1:168771800-168774200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:168773000-168774200	Enhancers	Brain Angular Gyrus	brain
5	chr1:168773000-168774400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:168773200-168774200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:168773200-168774200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:168773200-168774400	Enhancers	Brain Germinal Matrix	brain
9	chr1:168773400-168774400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr1:168773600-168774400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:168773800-168774400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:168773800-168774600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:168773800-168775600	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links