Variant report

Variant	rs55855548
Chromosome Location	chr5:8209773-8209774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10462854	0.91[ASN][1000 genomes]
rs10475413	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10512948	0.92[ASN][1000 genomes]
rs11134295	0.80[ASN][1000 genomes]
rs11740670	0.83[ASN][1000 genomes]
rs12233945	0.91[ASN][1000 genomes]
rs16880169	0.92[ASN][1000 genomes]
rs16880188	0.91[ASN][1000 genomes]
rs66745176	0.91[ASN][1000 genomes]
rs68100125	0.91[ASN][1000 genomes]
rs6867552	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6882328	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024542	chr5:8138412-8299908	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv880948	chr5:8155254-8228409	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv880325	chr5:8155254-8231744	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3378011	chr5:8206352-8210850	Enhancers Active TSS Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3336455	chr5:8207152-8210350	Bivalent Enhancer Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3416828	chr5:8207252-8210350	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3360637	chr5:8207252-8210750	Weak transcription Enhancers Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8208000-8213200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:8208800-8212400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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