Variant report

Variant rs55856492
Chromosome Location chr19:41115614-41115615
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41106000-41136800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr19:41109800-41122600 Weak transcription Aorta Aorta
3 chr19:41110000-41118200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr19:41112000-41116000 Enhancers Stomach Mucosa stomach
5 chr19:41112000-41116200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr19:41112000-41116200 Weak transcription NHLF lung
7 chr19:41114400-41116200 Weak transcription HSMMtube muscle
8 chr19:41114400-41119400 Weak transcription Ovary ovary
9 chr19:41114800-41115800 Flanking Active TSS Primary T cells from cord blood blood
10 chr19:41114800-41117400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
11 chr19:41115000-41116400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
12 chr19:41115000-41116400 Flanking Active TSS K562 blood
13 chr19:41115000-41116800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr19:41115000-41118000 Weak transcription Fetal Kidney kidney
15 chr19:41115200-41115800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr19:41115200-41116000 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr19:41115200-41116000 Flanking Active TSS Primary hematopoietic stem cells blood
18 chr19:41115200-41116000 Bivalent Enhancer Brain Germinal Matrix brain
19 chr19:41115200-41116000 Active TSS Brain Hippocampus Middle brain
20 chr19:41115200-41116000 Flanking Active TSS Fetal Intestine Large intestine
21 chr19:41115200-41116000 Active TSS Pancreatic Islets Pancreatic Islet
22 chr19:41115200-41116000 Active TSS A549 lung
23 chr19:41115200-41116000 Active TSS Osteobl bone
24 chr19:41115200-41116200 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
25 chr19:41115200-41116200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
26 chr19:41115200-41116200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr19:41115200-41116200 Active TSS Breast Myoepithelial Primary Cells Breast
28 chr19:41115200-41116200 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
29 chr19:41115200-41116200 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr19:41115200-41116200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
31 chr19:41115200-41116200 Flanking Bivalent TSS/Enh Fetal Thymus thymus
32 chr19:41115200-41116400 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
33 chr19:41115200-41116400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr19:41115200-41116400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
35 chr19:41115200-41116400 Flanking Bivalent TSS/Enh Thymus Thymus
36 chr19:41115200-41116400 Flanking Active TSS GM12878-XiMat blood
37 chr19:41115200-41116600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
38 chr19:41115200-41116600 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
39 chr19:41115200-41116600 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
40 chr19:41115200-41116600 Flanking Active TSS Primary B cells from peripheral blood blood
41 chr19:41115200-41116600 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
42 chr19:41115200-41116600 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
43 chr19:41115200-41116600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
44 chr19:41115200-41116600 Flanking Active TSS Adipose Nuclei Adipose
45 chr19:41115200-41116600 Flanking Bivalent TSS/Enh HepG2 liver
46 chr19:41115200-41116800 Active TSS Rectal Smooth Muscle rectum
47 chr19:41115200-41117000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
48 chr19:41115200-41117400 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
49 chr19:41115200-41117800 Flanking Active TSS Primary T cells fromperipheralblood blood
50 chr19:41115200-41118000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin

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