Variant report
| Variant | rs55858016 |
|---|---|
| Chromosome Location | chr6:79274751-79274752 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11751885 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11753657 | 0.88[EUR][1000 genomes] |
| rs11755342 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11756326 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11757555 | 0.82[EUR][1000 genomes] |
| rs11759337 | 0.89[EUR][1000 genomes] |
| rs16890184 | 0.88[EUR][1000 genomes] |
| rs17332393 | 0.89[EUR][1000 genomes] |
| rs55644721 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs55883909 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62426506 | 0.89[EUR][1000 genomes] |
| rs62426508 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62426527 | 0.89[EUR][1000 genomes] |
| rs62426531 | 0.83[EUR][1000 genomes] |
| rs62426535 | 0.83[EUR][1000 genomes] |
| rs62426552 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62426553 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62426554 | 1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9294120 | 0.88[EUR][1000 genomes] |
| rs9443600 | 0.92[EUR][1000 genomes] |
| rs9443601 | 0.88[EUR][1000 genomes] |
| rs9443602 | 0.88[EUR][1000 genomes] |
| rs9448490 | 0.89[EUR][1000 genomes] |
| rs9448492 | 0.88[EUR][1000 genomes] |
| rs9448495 | 0.88[EUR][1000 genomes] |
| rs9448498 | 0.88[EUR][1000 genomes] |
| rs9448499 | 0.88[EUR][1000 genomes] |
| rs9448500 | 0.88[EUR][1000 genomes] |
| rs9448505 | 0.85[EUR][1000 genomes] |
| rs9448508 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886235 | chr6:78861808-79369972 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv604011 | chr6:79042990-79455282 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886300 | chr6:79129963-79341891 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv522646 | chr6:79185106-79333988 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1028767 | chr6:79200713-79341224 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79266200-79279400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr6:79272000-79282000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 3 | chr6:79273600-79275800 | Enhancers | HUVEC | blood vessel |
