Variant report

Variant	rs55883909
Chromosome Location	chr6:79283641-79283642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11751885	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11753657	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11755342	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11756326	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11757555	0.87[EUR][1000 genomes]
rs11759337	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16890184	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17332393	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55644721	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55858016	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426506	0.83[EUR][1000 genomes]
rs62426508	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426527	0.83[EUR][1000 genomes]
rs62426531	0.89[EUR][1000 genomes]
rs62426535	0.89[EUR][1000 genomes]
rs62426551	0.83[EUR][1000 genomes]
rs62426552	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62426553	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62426554	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9294120	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9443600	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9443601	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9443602	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9448490	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9448492	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9448495	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9448498	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9448499	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9448500	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9448505	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9448508	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886235	chr6:78861808-79369972	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv604011	chr6:79042990-79455282	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886300	chr6:79129963-79341891	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522646	chr6:79185106-79333988	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028767	chr6:79200713-79341224	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79283600-79284000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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