Variant report

Variant	rs55860273
Chromosome Location	chr5:127253723-127253724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10064259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10065500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11956483	1.00[EUR][1000 genomes]
rs2139577	1.00[EUR][1000 genomes]
rs57628458	1.00[EUR][1000 genomes]
rs58981401	1.00[EUR][1000 genomes]
rs60836524	1.00[EUR][1000 genomes]
rs61408727	1.00[EUR][1000 genomes]
rs6877411	1.00[EUR][1000 genomes]
rs6879972	1.00[EUR][1000 genomes]
rs6898650	1.00[EUR][1000 genomes]
rs6899086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710989	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7713224	1.00[EUR][1000 genomes]
rs9285908	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9327456	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127252400-127253800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:127252800-127253800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:127253000-127253800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr5:127253000-127255200	Weak transcription	Fetal Intestine Small	intestine
5	chr5:127253000-127266200	Weak transcription	Fetal Heart	heart
6	chr5:127253200-127253800	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:127253200-127253800	Enhancers	Ovary	ovary
8	chr5:127253400-127255400	Weak transcription	Stomach Mucosa	stomach
9	chr5:127253600-127259000	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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