Variant report

Variant	rs60836524
Chromosome Location	chr5:127255464-127255465
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10064259	1.00[EUR][1000 genomes]
rs10065500	1.00[EUR][1000 genomes]
rs11956483	1.00[EUR][1000 genomes]
rs2139577	1.00[EUR][1000 genomes]
rs55860273	1.00[EUR][1000 genomes]
rs57628458	1.00[EUR][1000 genomes]
rs58981401	1.00[EUR][1000 genomes]
rs61408727	1.00[EUR][1000 genomes]
rs6877411	1.00[EUR][1000 genomes]
rs6879972	1.00[EUR][1000 genomes]
rs6898650	1.00[EUR][1000 genomes]
rs6899086	1.00[EUR][1000 genomes]
rs7710989	1.00[EUR][1000 genomes]
rs7713224	1.00[EUR][1000 genomes]
rs9285908	1.00[EUR][1000 genomes]
rs9327456	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127253000-127266200	Weak transcription	Fetal Heart	heart
2	chr5:127253600-127259000	Weak transcription	GM12878-XiMat	blood
3	chr5:127253800-127261400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:127255200-127255600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:127255200-127255600	Enhancers	Brain Angular Gyrus	brain
6	chr5:127255200-127255600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:127255400-127255800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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