Variant report

Variant	rs558615602
Chromosome Location	chr19:44864844-44864845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:44864800-44865045	HepG2	liver:	n/a	chr19:44864900-44864911
2	CEBPB	chr19:44864746-44865036	A549	lung:	n/a	chr19:44864900-44864911
3	CEBPB	chr19:44864820-44865058	IMR90	lung:	n/a	chr19:44864900-44864911

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:44864843-44864893	HNPCEpiC	eye:	n/a
2	chr19:44864843-44864893	PrEC	prostate:	n/a
3	chr19:44864843-44864893	HCT-116	colon:	n/a
4	chr19:44864843-44864893	MCF-7	breast:	n/a
5	chr19:44864843-44864893	BJ	skin:	n/a
6	chr19:44864843-44864893	GM19239	blood:	n/a
7	chr19:44864843-44864893	HRPEpiC	eye:	n/a
8	chr19:44864843-44864893	K562	blood:	n/a
9	chr19:44864843-44864893	H1-hESC	embryonic stem cell:	embryo
10	chr19:44864843-44864893	U87	brain:	n/a
11	chr19:44864843-44864893	HEK293	kidney:	embryo
12	chr19:44864843-44864893	HL-60	blood:	n/a
13	chr19:44864843-44864893	BE2_C	brain:	n/a
14	chr19:44864843-44864893	GM12891	blood:	n/a
15	chr19:44864843-44864893	NT2-D1	testis:	n/a
16	chr19:44864843-44864893	GM06990	blood:	n/a
17	chr19:44864843-44864893	HCPEpiC	choroid plexus:	n/a
18	chr19:44864843-44864893	Hepatocyte	liver:	n/a
19	chr19:44864843-44864893	AG10803	skin:	n/a
20	chr19:44864843-44864893	PANC-1	pancreas:	n/a
21	chr19:44864843-44864893	GM12878	blood:	n/a
22	chr19:44864843-44864893	NHBE	bronchial:	n/a
23	chr19:44864843-44864893	HUVEC	blood vessel:	n/a
24	chr19:44864843-44864893	HMEC	breast:	n/a
25	chr19:44864843-44864893	T-47D	breast:	n/a
26	chr19:44864843-44864893	Hela-S3	cervix:	n/a
27	chr19:44864843-44864893	SAEC	small airway:	n/a
28	chr19:44864843-44864893	HAEpiC	amniotic membrane:	n/a
29	chr19:44864843-44864893	ProgFib	skin:	n/a
30	chr19:44864843-44864893	HIPEpiC	eye:	n/a
31	chr19:44864843-44864893	HRCEpiC	kidney:	n/a
32	chr19:44864843-44864893	GM12892	blood:	n/a
33	chr19:44864843-44864893	RPTEC	kidney:	n/a
34	chr19:44864843-44864893	HepG2	liver:	n/a
35	chr19:44864843-44864893	ECC-1	luminal epithelium:	n/a
36	chr19:44864843-44864893	HCF	heart:	n/a
37	chr19:44864843-44864893	AG09309	skin:	n/a
38	chr19:44864843-44864893	SK-N-SH_RA	brain:	n/a
39	chr19:44864843-44864893	SKMC	muscle:	n/a
40	chr19:44864843-44864893	IMR90	lung:	fetal
41	chr19:44864843-44864893	ovcar-3	ovarian:	n/a
42	chr19:44864843-44864893	LNCaP	prostate:	n/a
43	chr19:44864843-44864893	SK-N-SH	brain:	n/a
44	chr19:44864843-44864893	AG09319	gingival:	n/a
45	chr19:44864843-44864893	SK-N-MC	brain:	n/a
46	chr19:44864843-44864893	Caco-2	colon:	n/a
47	chr19:44864843-44864893	NH-A	brain:	n/a
48	chr19:44864843-44864893	AG04449	skin:	fetal
49	chr19:44864843-44864893	AG04450	lung:	fetal
50	chr19:44864843-44864893	HRE	kidney:	n/a

No data

Variant related genes	Relation type
ZNF112	TF binding region
ZNF112	CpG island

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv963093	chr19:44850276-44876742	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv912111	chr19:44852134-44902190	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv579855	chr19:44852134-44930348	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv515911	chr19:44852134-44935019	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv912112	chr19:44853707-45011727	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv579856	chr19:44855757-44899820	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv912113	chr19:44858776-44928885	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv912114	chr19:44858776-45002563	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv1062330	chr19:44863939-44938277	Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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