Variant report

Variant	rs55867617
Chromosome Location	chr8:126537179-126537180
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126536829..126538764-chr8:126542132..126544383,2	MCF-7	breast:
2	chr8:126440014..126446143-chr8:126536595..126545632,13	MCF-7	breast:
3	chr8:126531237..126534656-chr8:126536046..126538619,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10956252	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551397	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1551398	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1551400	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28510097	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4871611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs921720	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921721	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126525800-126538800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126526000-126537400	Weak transcription	Fetal Lung	lung
3	chr8:126527000-126538200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:126528000-126537200	Weak transcription	Psoas Muscle	Psoas
5	chr8:126533600-126539000	Weak transcription	Esophagus	oesophagus
6	chr8:126534800-126537200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:126534800-126538400	Weak transcription	Right Atrium	heart
8	chr8:126535000-126537200	Weak transcription	Adipose Nuclei	Adipose
9	chr8:126535200-126537200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:126535400-126543200	Weak transcription	Ovary	ovary
11	chr8:126536800-126537200	Enhancers	Hela-S3	cervix
12	chr8:126537000-126538000	Enhancers	A549	lung
13	chr8:126537000-126538200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:126537000-126538200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:126537000-126539200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:126537000-126539200	Enhancers	HSMMtube	muscle
17	chr8:126537000-126539400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:126537000-126541000	Enhancers	Liver	Liver
19	chr8:126537000-126541200	Enhancers	NHDF-Ad	bronchial
20	chr8:126537000-126541200	Enhancers	NHEK	skin
21	chr8:126537000-126541400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:126537000-126541400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:126537000-126541400	Enhancers	HMEC	breast
24	chr8:126537000-126541400	Enhancers	NH-A	brain
25	chr8:126537000-126541400	Enhancers	NHLF	lung
26	chr8:126537000-126541400	Enhancers	Osteobl	bone
27	chr8:126537000-126541600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:126537000-126541600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:126537000-126541800	Enhancers	Skeletal Muscle Female	skeletal muscle

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