Variant report

Variant	rs28510097
Chromosome Location	chr8:126541090-126541091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126518353..126521335-chr8:126539597..126541108,2	K562	blood:
2	chr8:126443899..126444683-chr8:126540924..126541790,2	MCF-7	breast:
3	chr8:126539784..126542545-chr8:126545491..126550201,4	MCF-7	breast:
4	chr8:126540526..126543292-chr8:126545222..126547208,2	K562	blood:
5	chr8:126440014..126446143-chr8:126536595..126545632,13	MCF-7	breast:
6	chr1:173836796..173837296-chr8:126540725..126541226,2	Hela-S3	cervix:
7	chr8:126538658..126542290-chr8:126619301..126623874,4	MCF-7	breast:
8	chr8:126540772..126542899-chr8:126554172..126555879,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction
ENSG00000185278	Chromatin interaction
ENSG00000234741	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10956252	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1551397	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551398	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551400	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1809167	0.89[ASN][1000 genomes]
rs4871611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55867617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7818434	0.93[ASN][1000 genomes]
rs921720	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs921721	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126535400-126543200	Weak transcription	Ovary	ovary
2	chr8:126537000-126541200	Enhancers	NHDF-Ad	bronchial
3	chr8:126537000-126541200	Enhancers	NHEK	skin
4	chr8:126537000-126541400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:126537000-126541400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:126537000-126541400	Enhancers	HMEC	breast
7	chr8:126537000-126541400	Enhancers	NH-A	brain
8	chr8:126537000-126541400	Enhancers	NHLF	lung
9	chr8:126537000-126541400	Enhancers	Osteobl	bone
10	chr8:126537000-126541600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:126537000-126541600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:126537000-126541800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:126537200-126541200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:126537200-126541200	Enhancers	Adipose Nuclei	Adipose
15	chr8:126537200-126541800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:126538200-126541200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr8:126538200-126541400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:126538600-126541200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:126538800-126541200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr8:126538800-126541200	Enhancers	Fetal Muscle Leg	muscle
21	chr8:126538800-126541600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:126538800-126541800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr8:126539000-126541200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:126539000-126541200	Enhancers	Duodenum Mucosa	Duodenum
25	chr8:126539000-126541800	Enhancers	Placenta	Placenta
26	chr8:126539000-126542000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr8:126539200-126542400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:126539200-126544400	Weak transcription	Right Atrium	heart
29	chr8:126539600-126541200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr8:126539600-126541200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr8:126539600-126541400	Enhancers	Fetal Thymus	thymus
32	chr8:126540000-126541200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:126540000-126541200	Enhancers	H9 Cell Line	embryonic stem cell
34	chr8:126540000-126541200	Enhancers	Esophagus	oesophagus
35	chr8:126540000-126541400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:126540000-126541400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr8:126540000-126541400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr8:126540000-126541600	Enhancers	A549	lung
39	chr8:126540000-126541800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr8:126540000-126541800	Enhancers	Psoas Muscle	Psoas
41	chr8:126540200-126541200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:126540200-126541200	Enhancers	Lung	lung
43	chr8:126540200-126542800	Enhancers	HSMMtube	muscle
44	chr8:126540400-126541200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:126540400-126541400	Enhancers	H1 Cell Line	embryonic stem cell
46	chr8:126540400-126541400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:126540600-126541200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr8:126540600-126541200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr8:126540600-126541200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr8:126540600-126541200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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