Variant report

Variant	rs7818434
Chromosome Location	chr8:126543476-126543477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1551397	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1551398	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1551399	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1551400	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1809167	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs28510097	0.93[ASN][1000 genomes]
rs4380956	0.80[CHB][hapmap]
rs4871611	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7002027	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs7005585	0.93[CEU][hapmap];0.86[CHB][hapmap];0.90[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap]
rs7005992	0.93[CEU][hapmap];0.84[CHB][hapmap]
rs921720	0.80[CHB][hapmap]
rs921721	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7818434	TRMT12	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126539200-126544400	Weak transcription	Right Atrium	heart
2	chr8:126541200-126543800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:126541200-126544000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:126541200-126545000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:126541200-126548000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:126541400-126544400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:126541400-126546800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:126543000-126543600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:126543000-126543600	Enhancers	Fetal Muscle Leg	muscle
10	chr8:126543000-126543800	Enhancers	Placenta	Placenta
11	chr8:126543000-126543800	Enhancers	NH-A	brain
12	chr8:126543000-126544000	Enhancers	K562	blood
13	chr8:126543000-126544400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:126543200-126543800	Enhancers	Ovary	ovary
15	chr8:126543200-126546600	Weak transcription	Spleen	Spleen
16	chr8:126543400-126546000	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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