Variant report

Variant	rs558677710
Chromosome Location	chr11:71315966-71315967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:38)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:38 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:71315900-71316050	HEEpiC	esophagus:	n/a	n/a
2	CTCF	chr11:71315920-71316070	HFF	foreskin:	n/a	n/a
3	PAX5	chr11:71315778-71316599	GM12878	blood:	n/a	n/a
4	TCF12	chr11:71315807-71316419	GM12878	blood:	n/a	n/a
5	CTCF	chr11:71315820-71315970	BE2_C	brain:	n/a	n/a
6	CTCF	chr11:71315846-71315972	GM19239	blood:	n/a	n/a
7	CTCF	chr11:71315880-71316030	GM12873	blood:	n/a	n/a
8	CTCF	chr11:71315940-71316090	GM12873	blood:	n/a	n/a
9	CTCF	chr11:71315940-71316090	RPTEC	kidney:	n/a	n/a
10	EBF1	chr11:71315937-71316131	GM12878	blood:	n/a	n/a
11	POLR2A	chr11:71315851-71316617	GM12878	blood:	n/a	n/a
12	BATF	chr11:71315927-71316371	GM12878	blood:	n/a	n/a
13	IRF4	chr11:71315936-71316532	GM12878	blood:	n/a	n/a
14	CTCF	chr11:71315960-71316110	GM12872	blood:	n/a	n/a
15	TCF12	chr11:71315832-71316374	GM12878	blood:	n/a	n/a
16	PAX5	chr11:71315893-71316399	GM12878	blood:	n/a	n/a
17	TCF3	chr11:71315688-71316500	GM12878	blood:	n/a	n/a
18	CTCF	chr11:71315920-71316070	GM12867	blood:	n/a	n/a
19	CTCF	chr11:71315920-71316070	GM12874	blood:	n/a	n/a
20	EBF1	chr11:71315877-71316350	GM12878	blood:	n/a	n/a
21	POLR2A	chr11:71315900-71316308	Hela-S3	cervix:	n/a	n/a
22	CTCF	chr11:71315869-71315969	GM12891	blood:	n/a	n/a
23	CTCF	chr11:71315820-71316070	GM12864	blood:	n/a	n/a
24	EP300	chr11:71315876-71316381	GM12878	blood:	n/a	n/a
25	IRF4	chr11:71315806-71316491	GM12878	blood:	n/a	n/a
26	CTCF	chr11:71315941-71316517	K562	blood:	n/a	n/a
27	PAX5	chr11:71315911-71316462	GM12878	blood:	n/a	n/a
28	CTCF	chr11:71315856-71315972	Gliobla	brain:	n/a	n/a
29	CTCF	chr11:71315854-71315973	GM19238	blood:	n/a	n/a
30	CTCF	chr11:71315836-71315969	GM12878	blood:	n/a	n/a
31	CTCF	chr11:71315850-71315971	GM12892	blood:	n/a	n/a
32	CTCF	chr11:71315940-71316090	HCFaa	heart:	n/a	n/a
33	POLR2A	chr11:71315893-71316501	GM12878	blood:	n/a	n/a
34	POU2F2	chr11:71315763-71316811	GM12878	blood:	n/a	n/a
35	CTCF	chr11:71315820-71315970	GM12868	blood:	n/a	n/a
36	SPI1	chr11:71315925-71316365	GM12878	blood:	n/a	n/a
37	BCL11A	chr11:71315909-71316399	GM12878	blood:	n/a	n/a
38	CTCF	chr11:71315859-71316532	A549	lung:	n/a	n/a

No data

Variant related genes	Relation type
KRTAP5-11	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1043207	chr11:71293875-71442666	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv3527986	chr11:71298409-71620955	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3527987	chr11:71298409-71620955	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv1036258	chr11:71299175-71523551	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1041027	chr11:71299175-71527896	Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1051879	chr11:71299175-71536860	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1044041	chr11:71299175-71538991	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2761682	chr11:71299175-71619923	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv555403	chr11:71301189-71430470	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	esv3369271	chr11:71307946-71334603	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv972040	chr11:71315526-71330518	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71315200-71316000	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links