Variant report

Variant	rs55869467
Chromosome Location	chr9:7627532-7627533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10124811	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10815648	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10815651	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789902	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11793354	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12339406	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28406373	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28624636	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55918546	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56080493	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56941755	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60393832	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7860362	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7863608	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7865284	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7867163	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34566	chr9:7291742-7781370	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv818681	chr9:7292836-7781365	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1029032	chr9:7431547-7764888	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1028504	chr9:7523311-7682789	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv539978	chr9:7523311-7682789	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv892201	chr9:7524075-7742476	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1015795	chr9:7540787-7701648	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613266	chr9:7588854-7901308	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7626000-7627600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr9:7626000-7627600	Enhancers	Fetal Thymus	thymus
3	chr9:7626200-7627600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:7626800-7627600	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:7626800-7627600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:7626800-7627800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr9:7627000-7627600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:7627000-7627600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr9:7627000-7627600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr9:7627000-7627600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr9:7627000-7627600	Enhancers	Dnd41	blood
12	chr9:7627000-7627800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:7627000-7627800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr9:7627200-7627600	Enhancers	Primary T cells from cord blood	blood
15	chr9:7627400-7627600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:7627400-7627800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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