Variant report

Variant	rs55869705
Chromosome Location	chr19:41529424-41529425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41528977..41530590-chr19:41532130..41533740,2	K562	blood:

Variant related genes	Relation type
ENSG00000213908	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16974794	1.00[EUR][1000 genomes]
rs16974869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16974893	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1962261	1.00[EUR][1000 genomes]
rs28739581	1.00[EUR][1000 genomes]
rs34789700	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35950631	1.00[EUR][1000 genomes]
rs56194122	1.00[EUR][1000 genomes]
rs57484466	1.00[EUR][1000 genomes]
rs60618718	1.00[EUR][1000 genomes]
rs60923425	1.00[EUR][1000 genomes]
rs61402679	1.00[EUR][1000 genomes]
rs61557439	1.00[EUR][1000 genomes]
rs714097	1.00[EUR][1000 genomes]
rs7250597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7259758	1.00[EUR][1000 genomes]
rs73557121	1.00[EUR][1000 genomes]
rs73557149	1.00[EUR][1000 genomes]
rs73557170	1.00[EUR][1000 genomes]
rs73559241	1.00[EUR][1000 genomes]
rs73933721	1.00[EUR][1000 genomes]
rs73933728	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73933730	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8100958	1.00[EUR][1000 genomes]
rs8105382	1.00[EUR][1000 genomes]
rs8105465	1.00[EUR][1000 genomes]
rs8106305	1.00[EUR][1000 genomes]
rs8107218	1.00[EUR][1000 genomes]
rs8107990	1.00[EUR][1000 genomes]
rs8109477	1.00[EUR][1000 genomes]
rs8112043	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758500	chr19:41291627-41546068	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2758762	chr19:41291627-41546068	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv3337314	chr19:41388910-41534583	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2755485	chr19:41431935-41558271	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1058051	chr19:41497274-41558271	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41524600-41531800	Weak transcription	Liver	Liver
2	chr19:41529400-41529600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:41529400-41531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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