Variant report

Variant	rs55872343
Chromosome Location	chr1:166673885-166673886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12027513	0.84[EUR][1000 genomes]
rs12027782	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12028885	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12030491	0.86[EUR][1000 genomes]
rs12033500	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12036000	0.86[EUR][1000 genomes]
rs12046226	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048648	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184662	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3845545	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56164733	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61670955	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72701363	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72701393	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72701401	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548967	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2752389	chr1:166625342-166706342	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166671800-166676000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:166672200-166674000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:166672600-166674000	Flanking Active TSS	K562	blood
4	chr1:166673400-166674400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:166673400-166674400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:166673600-166676000	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:166673800-166674400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links