Variant report

Variant	rs12027513
Chromosome Location	chr1:166634842-166634843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr1:166634838-166635002	K562	blood:	n/a	n/a

Variant related genes	Relation type
FMO10P	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10494465	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10918537	0.87[ASN][1000 genomes]
rs10918538	0.89[ASN][1000 genomes]
rs10918540	0.91[ASN][1000 genomes]
rs10918541	0.91[ASN][1000 genomes]
rs11584519	0.95[ASN][1000 genomes]
rs12027782	0.81[EUR][1000 genomes]
rs12030491	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12033500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12036000	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12037240	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs12037515	0.89[ASN][1000 genomes]
rs12037521	0.89[ASN][1000 genomes]
rs12039131	0.86[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12041530	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12046226	0.84[EUR][1000 genomes]
rs12048648	0.84[EUR][1000 genomes]
rs12059082	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs12060217	0.91[ASN][1000 genomes]
rs12093588	0.93[ASN][1000 genomes]
rs12097049	0.87[ASN][1000 genomes]
rs1442501	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1583978	0.87[ASN][1000 genomes]
rs16857503	0.87[ASN][1000 genomes]
rs17470581	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17472444	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1837937	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2028560	0.87[ASN][1000 genomes]
rs2119901	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2184662	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2311231	0.89[ASN][1000 genomes]
rs35225454	0.87[ASN][1000 genomes]
rs35720927	0.85[ASN][1000 genomes]
rs3845545	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55872343	0.84[EUR][1000 genomes]
rs61670955	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6427019	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6427020	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6427021	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6670455	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6677448	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs72701363	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72701393	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72701401	0.84[EUR][1000 genomes]
rs7546913	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7548967	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs981409	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2757759	chr1:166491879-166650985	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758975	chr1:166491879-166650985	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2752389	chr1:166625342-166706342	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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