Variant report

Variant	rs12059082
Chromosome Location	chr1:166529218-166529219
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166528353..166531255-chr1:166533541..166536612,3	K562	blood:
2	chr1:166525448..166527938-chr1:166528907..166531054,2	K562	blood:

Variant related genes	Relation type
ENSG00000238087	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10494465	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10918529	0.88[YRI][hapmap]
rs10918537	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10918538	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918540	0.92[ASN][1000 genomes]
rs10918541	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11584519	0.80[ASN][1000 genomes]
rs12027513	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs12030491	0.82[ASN][1000 genomes]
rs12033500	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs12036000	0.82[ASN][1000 genomes]
rs12037240	0.86[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12037515	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12037521	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12039131	0.85[CHB][hapmap];0.80[JPT][hapmap];0.95[ASN][1000 genomes]
rs12041530	0.82[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs12060217	0.92[ASN][1000 genomes]
rs12093588	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12097049	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1442501	0.83[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1583978	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16857503	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17470581	0.83[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17472444	0.83[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs1837937	0.83[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2028560	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119901	0.93[CHB][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs2311231	0.95[ASN][1000 genomes]
rs35225454	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35720927	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6427019	0.92[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs6427020	0.92[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs6427021	0.93[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs6670455	0.83[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6677448	0.92[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs7546913	0.92[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs981409	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2757759	chr1:166491879-166650985	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758975	chr1:166491879-166650985	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3375452	chr1:166495343-166534187	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3440978	chr1:166498343-166533931	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv872511	chr1:166505186-166590046	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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