Variant report

Variant	rs11584519
Chromosome Location	chr1:166642145-166642146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10494465	0.84[ASN][1000 genomes]
rs10918537	0.84[ASN][1000 genomes]
rs10918538	0.85[ASN][1000 genomes]
rs10918540	0.87[ASN][1000 genomes]
rs10918541	0.87[ASN][1000 genomes]
rs12027513	0.95[ASN][1000 genomes]
rs12030491	0.98[ASN][1000 genomes]
rs12033500	0.89[ASN][1000 genomes]
rs12036000	0.98[ASN][1000 genomes]
rs12037515	0.85[ASN][1000 genomes]
rs12037521	0.85[ASN][1000 genomes]
rs12039131	0.85[ASN][1000 genomes]
rs12059082	0.80[ASN][1000 genomes]
rs12060217	0.87[ASN][1000 genomes]
rs12093588	0.89[ASN][1000 genomes]
rs12097049	0.84[ASN][1000 genomes]
rs1442501	0.84[ASN][1000 genomes]
rs1583978	0.84[ASN][1000 genomes]
rs16857503	0.84[ASN][1000 genomes]
rs17470581	0.84[ASN][1000 genomes]
rs1837937	0.85[ASN][1000 genomes]
rs2028560	0.84[ASN][1000 genomes]
rs2119901	0.85[ASN][1000 genomes]
rs2184662	0.87[ASN][1000 genomes]
rs2311231	0.85[ASN][1000 genomes]
rs35225454	0.84[ASN][1000 genomes]
rs35720927	0.82[ASN][1000 genomes]
rs3845545	0.83[ASN][1000 genomes]
rs61670955	0.87[ASN][1000 genomes]
rs6427019	0.85[ASN][1000 genomes]
rs6427020	0.85[ASN][1000 genomes]
rs6427021	0.81[ASN][1000 genomes]
rs6670455	0.87[ASN][1000 genomes]
rs6677448	0.83[ASN][1000 genomes]
rs72701363	0.89[ASN][1000 genomes]
rs72701393	0.87[ASN][1000 genomes]
rs7546913	0.87[ASN][1000 genomes]
rs7548967	0.89[ASN][1000 genomes]
rs981409	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2757759	chr1:166491879-166650985	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758975	chr1:166491879-166650985	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2752389	chr1:166625342-166706342	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166641000-166643600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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