Variant report

Variant	rs17470581
Chromosome Location	chr1:166535293-166535294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:166535226-166535431	MCF10A-Er-Src	breast:	n/a	n/a
2	MAFK	chr1:166535256-166535324	HepG2	liver:	n/a	chr1:166535276-166535287

Variant related genes	Relation type
FMO8P	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10494465	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918537	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918538	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10918540	0.97[ASN][1000 genomes]
rs10918541	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11584519	0.84[ASN][1000 genomes]
rs12027513	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs12030491	0.86[ASN][1000 genomes]
rs12033500	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12036000	0.86[ASN][1000 genomes]
rs12037240	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs12037515	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12037521	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12039131	0.81[CHB][hapmap];0.99[ASN][1000 genomes]
rs12041530	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs12059082	0.83[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12060217	0.97[ASN][1000 genomes]
rs12093588	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12097049	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442501	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583978	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16857503	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17472444	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1837937	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2028560	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119901	0.88[CHB][hapmap];0.87[JPT][hapmap];0.99[ASN][1000 genomes]
rs2311231	0.99[ASN][1000 genomes]
rs34084813	0.83[EUR][1000 genomes]
rs35031222	0.83[EUR][1000 genomes]
rs35225454	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35720927	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6427019	0.87[CHB][hapmap];0.86[JPT][hapmap];0.99[ASN][1000 genomes]
rs6427020	0.87[CHB][hapmap];0.86[JPT][hapmap];0.99[ASN][1000 genomes]
rs6427021	0.88[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs6670455	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6677448	0.87[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs7546913	0.87[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs981409	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv2757759	chr1:166491879-166650985	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758975	chr1:166491879-166650985	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv872511	chr1:166505186-166590046	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv872512	chr1:166532565-166581706	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv872513	chr1:166532565-166590046	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv872514	chr1:166532565-166595209	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv872515	chr1:166532565-166595692	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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