Variant report

Variant	rs55874432
Chromosome Location	chr2:47012158-47012159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:47005678..47008315-chr2:47011541..47013639,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10495937	0.86[EUR][1000 genomes]
rs1446496	0.91[EUR][1000 genomes]
rs1446497	0.91[EUR][1000 genomes]
rs1446498	0.91[EUR][1000 genomes]
rs17771005	0.84[EUR][1000 genomes]
rs17771017	0.91[EUR][1000 genomes]
rs17771098	0.80[EUR][1000 genomes]
rs17771201	0.80[EUR][1000 genomes]
rs17771942	0.91[EUR][1000 genomes]
rs17772285	0.91[EUR][1000 genomes]
rs17821989	0.91[EUR][1000 genomes]
rs17822782	0.91[EUR][1000 genomes]
rs2045290	0.91[EUR][1000 genomes]
rs41371146	0.86[EUR][1000 genomes]
rs41379148	0.91[EUR][1000 genomes]
rs55928499	0.83[EUR][1000 genomes]
rs56006635	0.86[EUR][1000 genomes]
rs56199036	0.91[EUR][1000 genomes]
rs56224128	0.86[EUR][1000 genomes]
rs56800355	0.91[EUR][1000 genomes]
rs57124017	0.86[EUR][1000 genomes]
rs58903656	0.91[EUR][1000 genomes]
rs6731970	0.85[EUR][1000 genomes]
rs6735101	0.84[EUR][1000 genomes]
rs72802415	0.88[EUR][1000 genomes]
rs72802420	0.91[EUR][1000 genomes]
rs72802426	0.91[EUR][1000 genomes]
rs72802429	0.86[EUR][1000 genomes]
rs72802430	0.83[EUR][1000 genomes]
rs72802435	0.86[EUR][1000 genomes]
rs72802441	0.85[EUR][1000 genomes]
rs72802444	0.91[EUR][1000 genomes]
rs72802448	0.91[EUR][1000 genomes]
rs72802451	0.91[EUR][1000 genomes]
rs72802454	0.91[EUR][1000 genomes]
rs72802455	0.91[EUR][1000 genomes]
rs72802456	0.91[EUR][1000 genomes]
rs72802458	0.90[EUR][1000 genomes]
rs72802463	0.85[EUR][1000 genomes]
rs72802466	0.91[EUR][1000 genomes]
rs72802467	0.91[EUR][1000 genomes]
rs72802486	0.91[EUR][1000 genomes]
rs72802487	0.91[EUR][1000 genomes]
rs72802492	0.93[EUR][1000 genomes]
rs72802498	0.97[EUR][1000 genomes]
rs7566275	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
5	nsv457352	chr2:47004788-47325973	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv581749	chr2:47004788-47325973	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47005400-47012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:47008200-47021000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:47009800-47025200	Weak transcription	Right Ventricle	heart
4	chr2:47010000-47015000	Weak transcription	Psoas Muscle	Psoas

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