Variant report

Variant	rs55883773
Chromosome Location	chr2:144844569-144844570
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12613814	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12614766	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1427310	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16823481	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823487	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861878	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28544584	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55716423	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56395361	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58738282	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59687135	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72852992	0.85[ASN][1000 genomes]
rs72852993	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72852998	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72852999	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72853001	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72854106	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72854129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72854165	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72854176	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72854193	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72854200	0.87[ASN][1000 genomes]
rs72855507	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72855511	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7608953	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv532756	chr2:144746353-145315596	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1005376	chr2:144803630-144968946	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1013338	chr2:144806920-144969818	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1008032	chr2:144840552-145234229	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv834396	chr2:144842187-145019465	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv963178	chr2:144842240-144850840	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144838000-144855000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:144838600-144846200	Enhancers	NHDF-Ad	bronchial
3	chr2:144839800-144845400	Enhancers	HSMM	muscle
4	chr2:144839800-144855200	Weak transcription	Primary B cells from cord blood	blood
5	chr2:144840200-144844600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:144840600-144855000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:144841400-144849000	Weak transcription	Fetal Lung	lung
8	chr2:144842000-144845400	Enhancers	Osteobl	bone
9	chr2:144843000-144857200	Weak transcription	Psoas Muscle	Psoas
10	chr2:144843200-144857000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:144844000-144844800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:144844000-144845400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:144844200-144845000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:144844200-144845000	Enhancers	NHEK	skin
15	chr2:144844200-144845400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:144844400-144844600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:144844400-144844600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr2:144844400-144844600	Enhancers	HMEC	breast
19	chr2:144844400-144845000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:144844400-144845000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:144844400-144845000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:144844400-144845200	Enhancers	HSMMtube	muscle
23	chr2:144844400-144845200	Enhancers	NH-A	brain
24	chr2:144844400-144845200	Enhancers	NHLF	lung

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