Variant report

Variant	rs72854129
Chromosome Location	chr2:144822018-144822019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12613814	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12614766	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1427310	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16823481	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16823487	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1861878	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28544584	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55716423	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55883773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56395361	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58738282	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59687135	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72852992	0.86[ASN][1000 genomes]
rs72852993	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72852998	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72852999	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72853001	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72854106	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72854165	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72854176	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72854193	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72854200	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72855507	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72855511	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7608953	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv532756	chr2:144746353-145315596	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1005376	chr2:144803630-144968946	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1013338	chr2:144806920-144969818	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144821800-144822200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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